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Solution for stuck loops, parsing errors, and persistent <think> tag prompts

Status: Open.

#272 In snap-stanford/Biomni;

· cmubioinformatics opened on Dec 27, 2025

Questions about Using BioMin in Offline Environments and DataLake Integration

Status: Open.

#271 In snap-stanford/Biomni;

· Zachary-324 opened on Dec 25, 2025

Setup much faster than readme indicates?

Status: Open.

#267 In snap-stanford/Biomni;

· Steven-Palayew opened on Dec 10, 2025

.env requires always an anthropic key?

Status: Open.

#264 In snap-stanford/Biomni;

· corinabioinformatic opened on Nov 25, 2025

MCP

Status: Open.

#261 In snap-stanford/Biomni;

· fatcatloversknnymonkey opened on Nov 17, 2025

PDF fonts not working.

Status: Open.

#260 In snap-stanford/Biomni;

· evolu8 opened on Nov 14, 2025

<code>&lt;observe&gt;</code> vs. <code>&lt;observation&gt;</code>

Status: Open.

#258 In snap-stanford/Biomni;

· vladsavelyev opened on Nov 11, 2025

R0 example stuck in loop

Status: Open.

#257 In snap-stanford/Biomni;

· millerh1 opened on Nov 11, 2025

Missing implementation of create_registration_visualization

Status: Open.

#255 In snap-stanford/Biomni;

· choikx3 opened on Nov 6, 2025

Isolate Code Execution in a Container and Limit Side Effects to a Directory

Status: Open.

#254 In snap-stanford/Biomni;

· SanderGi opened on Nov 5, 2025

make the agent output some of its runtime files to a specified directory

Status: Open.

#241 In snap-stanford/Biomni;

· miantiaooval opened on Oct 14, 2025

GRAPH_RECURSION_LIMIT

Status: Open.

#237 In snap-stanford/Biomni;

· evolu8 opened on Oct 8, 2025