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    9 repositories

    • encode-202006-jamboree-detrout-rna-sc-pipeline

      Public
      My efforts at getting the single cell RNA seq pipelines to run
      Jupyter Notebook
      •0•1•0•0•Updated Feb 27, 2024Feb 27, 2024

    • single_cell_annotation

      Public
      Python
      •2•0•0•2•Updated Nov 22, 2022Nov 22, 2022

    • mpra_starr_qc

      Public
      QC pipeline for MPRA and STARR-seq experiments
      R
      •
      MIT License
      •2•0•0•0•Updated May 17, 2021May 17, 2021

    • tss-annotation

      Public
      Python
      •2•0•0•0•Updated Apr 16, 2021Apr 16, 2021

    • nawg_distal_reg_enhancer_synergy

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Jun 12, 2020Jun 12, 2020

    • scrna-count-analysis

      Public
      Notebooks to analyze scRNA count matrices
      Jupyter Notebook
      •0•0•0•0•Updated Jun 12, 2020Jun 12, 2020

    • locusselect_applications

      Public
      wrapper scripts, examples, jupyter notebooks for locusselect project. The locusselect repo contains the core functional python scripts needed for locus selection.This repo provides a way to track applications of locus selection scripts for specific genes/cell lines, etc.
      Jupyter Notebook
      •0•0•0•0•Updated Jun 11, 2020Jun 11, 2020

    • locusselect

      Public
      extraction of data embeddings from deep learning model layers; computation of embedding distance and visualization with umap/tsne
      Jupyter Notebook
      •1•0•0•0•Updated Jun 8, 2020Jun 8, 2020

    • HiCSampler

      Public
      Python
      •4•0•0•0•Updated Jun 7, 2020Jun 7, 2020