Skip to content

Navigation Menu

Appearance settings

View all features
- BY COMPANY SIZE
  Enterprises
  Small and medium teams
  Startups
  Nonprofits
- BY USE CASE
  App Modernization
  DevSecOps
  DevOps
  CI/CD
  View all use cases
- BY INDUSTRY
  Healthcare
  Financial services
  Manufacturing
  Government
  View all industries
View all solutions
- EXPLORE BY TOPIC
  AI
  Software Development
  DevOps
  Security
  View all topics
- EXPLORE BY TYPE
  Customer stories
  Events & webinars
  Ebooks & reports
  Business insights
  GitHub Skills
- SUPPORT & SERVICES
  Documentation
  Customer support
  Community forum
  Trust center
  Partners
View all resources
- COMMUNITY
  GitHub SponsorsFund open source developers
- PROGRAMS
  Security Lab
  Maintainer Community
  Accelerator
  GitHub Stars
  Archive Program
- REPOSITORIES
  Topics
  Trending
  Collections
- ENTERPRISE SOLUTIONS
  Enterprise platformAI-powered developer platform
- AVAILABLE ADD-ONS
  GitHub Advanced SecurityEnterprise-grade security features
  Copilot for BusinessEnterprise-grade AI features
  Premium SupportEnterprise-grade 24/7 support
Pricing

Search code, repositories, users, issues, pull requests...

Search

Clear

Search syntax tips

Provide feedback

We read every piece of feedback, and take your input very seriously.

Include my email address so I can be contacted

Saved searches

Use saved searches to filter your results more quickly

Name

Query

To see all available qualifiers, see our documentation.

Appearance settings

You signed in with another tab or window. Reload to refresh your session. You signed out in another tab or window. Reload to refresh your session. You switched accounts on another tab or window. Reload to refresh your session.

Dismiss alert

nf-core / sarek Public

Notifications You must be signed in to change notification settings
Fork 526
Star 555

Code
Issues 235
Pull requests 34
Actions
Security
Insights

Additional navigation options

Code
Issues
Pull requests
Actions
Security
Insights

Add some Variant Calling#4

Merged

maxulysse merged 39 commits intonf-core:devnf-core/sarek:devfrom

maxulysse:nf-core_VCmaxulysse/nf-core_sarek:nf-core_VCCopy head branch name to clipboard

May 3, 2019

Conversation Commits39 (39)Checks Files changed

Merged

Add some Variant Calling#4
maxulysse merged 39 commits intonf-core:devfrom
maxulysse:nf-core_VC

Commits

Commits on May 1, 2019

update README
maxulysse
committed
update .travis.yml
maxulysse
committed
add Jenkinsfile
maxulysse
committed
update conda environment file
maxulysse
committed
Merge remote-tracking branch 'upstream/dev' into dev
maxulysse
committed

Commits on May 2, 2019

update software_version collect
maxulysse
committed
trying to fix travis CI
maxulysse
committed
only one env
maxulysse
committed
remove pip upgrade
maxulysse
committed
remove lint
maxulysse
committed
remove lib/SarekUtils.groovy
maxulysse
committed
add References to .gitignore
maxulysse
committed
lower case
maxulysse
committed
remove picard
maxulysse
committed
improve software versions gathering
maxulysse
committed
fix docker owner
maxulysse
committed
update tests
maxulysse
committed
sort params
maxulysse
committed
add preprocessing
maxulysse
committed
improve TSV localisation
maxulysse
committed
improve multiple TSV
maxulysse
committed
add parrallelized BaseRecalibrator
maxulysse
committed
smaller test on travisCI
maxulysse
committed
try to fix path to data
maxulysse
committed
include building reference when testing...
maxulysse
committed
reorganize tests
maxulysse
committed
reduce memory and cpus
maxulysse
committed
add tests
maxulysse
committed
add flowcellLaneFromFastq function
maxulysse
committed
Merge remote-tracking branch 'upstream/dev' into nf-core
maxulysse
committed
update allelecount to 4.0.2
maxulysse
committed
add HaplotypeCaller
maxulysse
committed

Commits on May 3, 2019

improve Jenkins tests
maxulysse
committed
update GATK to 4.1.2.0
maxulysse
committed
update docs
maxulysse
committed
add single Strelka and single Manta
maxulysse
committed
add tests
maxulysse
committed
specify -ansi-log false for testing
maxulysse
committed
specify -ansi-log false for testing
maxulysse
committed

Footer

© 2026 GitHub, Inc.

Footer navigation

Terms
Privacy
Security
Status
Community
Docs
Contact

You can’t perform that action at this time.