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Add some Variant Calling#4

Merged
maxulysse merged 39 commits intonf-core:devfrom
maxulysse:nf-core_VC
May 3, 2019
Merged

Add some Variant Calling#4
maxulysse merged 39 commits intonf-core:devfrom
maxulysse:nf-core_VC

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  • Update allelecount to 4.0.2
  • Update GATK to 4.1.2.0
  • Update docs
  • Add HaplotypeCaller
  • Add single Strelka and single Manta

PR checklist

  • This comment contains a description of changes (with reason)
  • If you've fixed a bug or added code that should be tested, add tests!
  • Ensure the test suite passes (nextflow run . -profile test,docker).

@maxulysse maxulysse merged commit c117cba into nf-core:dev May 3, 2019
@maxulysse maxulysse deleted the nf-core_VC branch May 3, 2019 11:07
maxulysse pushed a commit that referenced this pull request Mar 6, 2020
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