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Get the versions of the software used in the MultiQC report#595
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szilvajuhos merged 1 commit intoSciLifeLab:masterfrom Jun 12, 2018
Merged
Get the versions of the software used in the MultiQC report#595szilvajuhos merged 1 commit intoSciLifeLab:masterfrom
szilvajuhos merged 1 commit intoSciLifeLab:masterfrom
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I'll definitively need to squash some commit together on this PR. |
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wow, time for some |
ewels
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Jun 1, 2018
| $BuildVCFIndex.container = "${params.repository}/igvtools:${params.tag}" | ||
| $ConcatVCF.container = "${params.repository}/sarek:${params.tag}" | ||
| $CreateRecalibrationTable.container = "${params.repository}/gatk:${params.tag}" | ||
| $GetVersionAll.container = "${params.repository}/qctools:${params.tag}" |
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It may be possible to tidy up the configs here quite a bit with the new nextflow concept of label (in new versions of NF only)
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I think I was a little too extreme with my rebase... |
szilvajuhos
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Jun 12, 2018
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It looks Groovy is the next language I have to learn ...
jherrero
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in UCL-BLIC/Sarek_v2.2.1
Apr 11, 2019
Get the versions of the software used in the MultiQC report
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bin/scrape_tool_versions.pyinspired by @ewels and @apeltzerGenerateMultiQCconfigprocess bycreateMultiQCconfig()functionSarekUtils.defineDirectoryMap()function instead of in scriptdefineDirectoryMap()function