Merge remote-tracking branch 'upstream/master' into MultiQC

Author: maxulysse

configuration/binac.config

@@ -0,0 +1,22 @@
+/*
+ * ----------------------------------------------------------------------------
+ *  Nextflow config file for use with Singularity on BINAC cluster in Tuebingen
+ * ----------------------------------------------------------------------------
+ * Defines basic usage limits and singularity image id.
+ */
+
+singularity {
+    enabled = true
+}
+
+process {
+    beforeScript = 'module load devel/singularity/2.4.1'
+    executor = 'pbs'
+    queue = 'short'
+}
+
+params {
+  max_memory = 128.GB
+  max_cpus = 28
+  max_time = 48.h
+}

nextflow.config

@@ -74,4 +74,14 @@ profiles {
     includeConfig 'configuration/travis.config'
     includeConfig 'configuration/singularity-path.config'
   }
+
+  // Default config for german BinAC cluster 
+  // Runs the pipeline using the pbs executor
+  // Singularity images will be pulled automatically
+  binac {
+    includeConfig 'configuration/base.config'
+    includeConfig 'configuration/binac.config'
+    includeConfig 'configuration/singularity.config'
+    includeConfig 'configuration/containers.config'
+  }
 }