Pre-release 2025.09.21 #3312
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Pre-release 2025.09.21 #3312
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epassaro
approved these changes
Sep 21, 2025
andrewfullard
approved these changes
Sep 21, 2025
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*beep* *bop* Hi, human. The Click here to see your results. |
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*beep* *bop* Details1 W292 [*] missing-newline-at-end-of-file
1 B018 [ ] useless-expression
Found 2 errors.
[*] 1 fixable with the `--fix` option.
Complete output(might be large): Details.ci-helpers/get_current_version.py:1:1: EXE001 Shebang is present but file is not executable
.ci-helpers/get_current_version.py:3:1: I001 [*] Import block is un-sorted or un-formatted
.ci-helpers/get_min_docstr_cov.py:1:1: EXE001 Shebang is present but file is not executable
.ci-helpers/get_min_docstr_cov.py:3:1: I001 [*] Import block is un-sorted or un-formatted
.ci-helpers/get_min_docstr_cov.py:5:1: F403 `from parse import *` used; unable to detect undefined names
.ci-helpers/get_min_docstr_cov.py:8:10: F405 `parse` may be undefined, or defined from star imports
.ci-helpers/get_next_version.py:1:1: EXE001 Shebang is present but file is not executable
.ci-helpers/get_next_version.py:3:1: I001 [*] Import block is un-sorted or un-formatted
.ci-helpers/update_credits.py:1:1: INP001 File `.ci-helpers/update_credits.py` is part of an implicit namespace package. Add an `__init__.py`.
.ci-helpers/update_credits.py:1:1: D209 [*] Multi-line docstring closing quotes should be on a separate line
.ci-helpers/update_credits.py:15:5: D202 [*] No blank lines allowed after function docstring (found 1)
.ci-helpers/update_credits.py:15:5: D209 [*] Multi-line docstring closing quotes should be on a separate line
.ci-helpers/update_credits.py:20:12: DTZ011 `datetime.date.today()` used
.ci-helpers/update_credits.py:24:20: S113 Probable use of `requests` call without timeout
.ci-helpers/update_credits.py:46:91: W291 Trailing whitespace
benchmarks/benchmark_base.py:1:1: I001 [*] Import block is un-sorted or un-formatted
benchmarks/benchmark_base.py:75:9: RET506 [*] Unnecessary `else` after `raise` statement
benchmarks/opacities_opacity.py:7:40: F401 [*] `tardis.opacities.opacities.compton_opacity_calculation` imported but unused
benchmarks/opacities_opacity_state.py:15:5: D204 [*] 1 blank line required after class docstring
benchmarks/opacities_opacity_state.py:20:5: B019 Use of `functools.lru_cache` or `functools.cache` on methods can lead to memory leaks
benchmarks/run_tardis.py:5:1: I001 [*] Import block is un-sorted or un-formatted
benchmarks/spectrum_formal_integral.py:54:10: W292 [*] No newline at end of file
benchmarks/transport_geometry_calculate_distances.py:13:5: B019 Use of `functools.lru_cache` or `functools.cache` on methods can lead to memory leaks
benchmarks/transport_montecarlo_estimators_radfield_estimator_calcs.py:20:5: B019 Use of `functools.lru_cache` or `functools.cache` on methods can lead to memory leaks
benchmarks/transport_montecarlo_interaction.py:16:15: W291 [*] Trailing whitespace
benchmarks/transport_montecarlo_interaction.py:18:5: B019 Use of `functools.lru_cache` or `functools.cache` on methods can lead to memory leaks
benchmarks/transport_montecarlo_main_loop.py:20:5: B019 Use of `functools.lru_cache` or `functools.cache` on methods can lead to memory leaks
benchmarks/transport_montecarlo_packet_trackers.py:6:40: F401 [*] `asv_runner.benchmarks.mark.parameterize` imported but unused
benchmarks/transport_montecarlo_packet_trackers.py:19:5: B019 Use of `functools.lru_cache` or `functools.cache` on methods can lead to memory leaks
benchmarks/transport_montecarlo_vpacket.py:54:5: B019 Use of `functools.lru_cache` or `functools.cache` on methods can lead to memory leaks
docs/analyzing_tardis/spectrum/spectrum-visualization-notebook.ipynb:cell 2:1:1: I001 [*] Import block is un-sorted or un-formatted
docs/analyzing_tardis/visualization/how_to_generating_widgets.ipynb:cell 5:1:1: I001 [*] Import block is un-sorted or un-formatted
docs/analyzing_tardis/visualization/how_to_generating_widgets.ipynb:cell 5:3:5: F401 [*] `tardis.visualization.shell_info_from_hdf` imported but unused
docs/analyzing_tardis/visualization/how_to_sdec_plot.ipynb:cell 2:2:1: I001 [*] Import block is un-sorted or un-formatted
docs/analyzing_tardis/visualization/how_to_sdec_plot.ipynb:cell 29:1:1: I001 [*] Import block is un-sorted or un-formatted
docs/analyzing_tardis/visualization/tutorial_convergence_plot.ipynb:cell 9:4:28: W291 [*] Trailing whitespace
docs/analyzing_tardis/visualization/tutorial_convergence_plot.ipynb:cell 12:29:1: W293 [*] Blank line contains whitespace
docs/analyzing_tardis/visualization/tutorial_convergence_plot.ipynb:cell 13:1:1: I001 [*] Import block is un-sorted or un-formatted
docs/analyzing_tardis/visualization/tutorial_montecarlo_packet_visualization.ipynb:cell 5:1:1: I001 [*] Import block is un-sorted or un-formatted
docs/conf.py:1:1: UP009 [*] UTF-8 encoding declaration is unnecessary
docs/conf.py:27:1: I001 [*] Import block is un-sorted or un-formatted
docs/conf.py:30:8: F401 [*] `tardis` imported but unused
docs/conf.py:35:1: I001 [*] Import block is un-sorted or un-formatted
docs/conf.py:40:43: PGH004 Use specific rule codes when using `noqa`
docs/conf.py:50:27: UP015 [*] Unnecessary mode argument
docs/conf.py:71:1: F405 `exclude_patterns` may be undefined, or defined from star imports
docs/conf.py:72:1: F405 `exclude_patterns` may be undefined, or defined from star imports
docs/conf.py:73:1: F405 `exclude_patterns` may be undefined, or defined from star imports
docs/conf.py:74:1: F405 `exclude_patterns` may be undefined, or defined from star imports
docs/conf.py:75:1: F405 `exclude_patterns` may be undefined, or defined from star imports
docs/conf.py:143:1: W293 Blank line contains whitespace
docs/conf.py:178:1: W293 Blank line contains whitespace
docs/conf.py:195:13: UP030 Use implicit references for positional format fields
docs/conf.py:195:13: UP032 [*] Use f-string instead of `format` call
docs/conf.py:222:1: E402 Module level import not at top of file
docs/conf.py:294:4: E712 Avoid equality comparisons to `True`; use `toml_config_tool_dict["tardis"]['edit_on_github']:` for truth checks
docs/conf.py:316:1: E402 Module level import not at top of file
docs/conf.py:368:1: E402 Module level import not at top of file
docs/conf.py:383:37: UP015 [*] Unnecessary modes, use `w`
docs/conf.py:398:41: UP015 [*] Unnecessary modes, use `w`
docs/conf.py:413:37: UP015 [*] Unnecessary modes, use `w`
docs/contributing/in_progress/nebular_phase/gammaray_deposition.ipynb:cell 4:1:1: I001 [*] Import block is un-sorted or un-formatted
docs/contributing/in_progress/nebular_phase/gammaray_deposition.ipynb:cell 4:14:15: W291 [*] Trailing whitespace
docs/contributing/in_progress/nebular_phase/gammaray_deposition.ipynb:cell 6:2:1: I001 [*] Import block is un-sorted or un-formatted
docs/contributing/in_progress/nebular_phase/gammaray_deposition.ipynb:cell 17:7:65: W605 [*] Invalid escape sequence: `\g`
docs/contributing/in_progress/nebular_phase/gammaray_deposition.ipynb:cell 17:9:24: E703 [*] Statement ends with an unnecessary semicolon
docs/contributing/tools/hdf_writer.ipynb:cell 3:9:1: W293 Blank line contains whitespace
docs/contributing/tools/hdf_writer.ipynb:cell 8:3:11: SyntaxError: Simple statements must be separated by newlines or semicolons
docs/contributing/tools/hdf_writer.ipynb:cell 13:3:11: SyntaxError: Simple statements must be separated by newlines or semicolons
docs/contributing/tools/hdf_writer.ipynb:cell 18:4:11: SyntaxError: Simple statements must be separated by newlines or semicolons
docs/contributing/tools/isotope_pd_subclass.ipynb:cell 2:1:1: I001 [*] Import block is un-sorted or un-formatted
docs/contributing/tools/isotope_pd_subclass.ipynb:cell 3:7:1: W293 [*] Blank line contains whitespace
docs/contributing/tools/isotope_pd_subclass.ipynb:cell 3:14:14: UP008 Use `super()` instead of `super(__class__, self)`
docs/contributing/tools/isotope_pd_subclass.ipynb:cell 3:16:1: W293 [*] Blank line contains whitespace
docs/contributing/tools/isotope_pd_subclass.ipynb:cell 3:23:28: C408 Unnecessary `dict()` call (rewrite as a literal)
docs/contributing/tools/isotope_pd_subclass.ipynb:cell 3:25:30: F523 [*] `.format` call has unused arguments at position(s): 0, 1
docs/contributing/tools/isotope_pd_subclass.ipynb:cell 3:25:30: UP032 [*] Use f-string instead of `format` call
docs/contributing/tools/isotope_pd_subclass.ipynb:cell 3:25:44: F821 Undefined name `nucname`
docs/contributing/tools/isotope_pd_subclass.ipynb:cell 3:32:30: C405 Unnecessary list literal (rewrite as a set literal)
docs/contributing/tools/isotope_pd_subclass.ipynb:cell 3:54:16: F821 Undefined name `nucname`
docs/contributing/tools/isotope_pd_subclass.ipynb:cell 3:54:41: F821 Undefined name `nucname`
docs/contributing/tools/isotope_pd_subclass.ipynb:cell 3:58:9: D202 [*] No blank lines allowed after function docstring (found 1)
docs/contributing/tools/isotope_pd_subclass.ipynb:cell 3:69:23: C408 Unnecessary `dict()` call (rewrite as a literal)
docs/contributing/tools/isotope_pd_subclass.ipynb:cell 3:71:30: UP030 Use implicit references for positional format fields
docs/contributing/tools/isotope_pd_subclass.ipynb:cell 3:71:30: UP032 [*] Use f-string instead of `format` call
docs/contributing/tools/isotope_pd_subclass.ipynb:cell 3:71:50: F821 Undefined name `nucname`
docs/contributing/tools/isotope_pd_subclass.ipynb:cell 3:75:17: F821 Undefined name `material`
docs/contributing/tools/isotope_pd_subclass.ipynb:cell 3:80:9: D202 [*] No blank lines allowed after function docstring (found 1)
docs/contributing/tools/isotope_pd_subclass.ipynb:cell 3:83:9: D412 [*] No blank lines allowed between a section header and its content ("Parameters")
docs/contributing/tools/isotope_pd_subclass.ipynb:cell 3:89:9: D407 [*] Missing dashed underline after section ("Returns")
docs/contributing/tools/isotope_pd_subclass.ipynb:cell 3:89:9: D406 [*] Section name should end with a newline ("Returns")
docs/contributing/tools/isotope_pd_subclass.ipynb:cell 3:100:18: W291 [*] Trailing whitespace
docs/contributing/tools/isotope_pd_subclass.ipynb:cell 3:103:9: D202 [*] No blank lines allowed after function docstring (found 1)
docs/contributing/tools/isotope_pd_subclass.ipynb:cell 3:104:59: W291 Trailing whitespace
docs/contributing/tools/isotope_pd_subclass.ipynb:cell 3:106:9: D407 [*] Missing dashed underline after section ("Returns")
docs/contributing/tools/isotope_pd_subclass.ipynb:cell 3:106:9: D406 [*] Section name should end with a newline ("Returns")
docs/contributing/tools/isotope_pd_subclass.ipynb:cell 3:114:67: W291 Trailing whitespace
docs/contributing/tools/isotope_pd_subclass.ipynb:cell 3:118:28: W291 Trailing whitespace
docs/contributing/tools/isotope_pd_subclass.ipynb:cell 3:122:9: D407 [*] Missing dashed underline after section ("Returns")
docs/contributing/tools/isotope_pd_subclass.ipynb:cell 3:122:9: D406 [*] Section name should end with a newline ("Returns")
docs/contributing/tools/profiling/profiling_example.ipynb:cell 3:3:1: I001 [*] Import block is un-sorted or un-formatted
docs/contributing/tools/profiling/profiling_example.ipynb:cell 3:3:20: F401 [*] `tardis.run_tardis` imported but unused
docs/contributing/tools/profiling/tardis_profiling_threads.ipynb:cell 2:1:1: I001 [*] Import block is un-sorted or un-formatted
docs/contributing/tools/profiling/tardis_profiling_threads.ipynb:cell 2:1:8: F401 [*] `tardis` imported but unused
docs/contributing/tools/profiling/tardis_profiling_threads.ipynb:cell 2:5:38: F401 [*] `tardis.io.atom_data.base.AtomData` imported but unused
docs/contributing/tools/profiling/tardis_profiling_threads.ipynb:cell 2:7:20: F811 [*] Redefinition of unused `run_tardis` from cell 2, line 2
docs/contributing/tools/profiling/tardis_profiling_threads.ipynb:cell 2:11:1: E402 Module level import not at top of cell
docs/contributing/tools/profiling/tardis_profiling_threads.ipynb:cell 2:11:1: I001 [*] Import block is un-sorted or un-formatted
docs/contributing/tools/profiling/tardis_profiling_threads.ipynb:cell 2:12:1: E402 Module level import not at top of cell
docs/contributing/tools/profiling/tardis_profiling_threads.ipynb:cell 2:13:1: E402 Module level import not at top of cell
docs/contributing/tools/profiling/tardis_profiling_threads.ipynb:cell 2:13:30: F401 [*] `astropy.units` imported but unused
docs/contributing/tools/profiling/tardis_profiling_threads.ipynb:cell 2:14:1: E402 Module level import not at top of cell
docs/contributing/tools/profiling/tardis_profiling_threads.ipynb:cell 2:15:1: E402 Module level import not at top of cell
docs/contributing/tools/profiling/tardis_profiling_threads.ipynb:cell 2:16:1: E402 Module level import not at top of cell
docs/contributing/tools/profiling/tardis_profiling_threads.ipynb:cell 4:2:5: D202 [*] No blank lines allowed after function docstring (found 1)
docs/contributing/tools/profiling/tardis_profiling_threads.ipynb:cell 4:8:1: W293 Blank line contains whitespace
docs/contributing/tools/profiling/tardis_profiling_threads.ipynb:cell 4:12:1: W293 Blank line contains whitespace
docs/contributing/tools/profiling/tardis_profiling_threads.ipynb:cell 4:17:1: W293 [*] Blank line contains whitespace
docs/contributing/tools/profiling/tardis_profiling_threads.ipynb:cell 4:22:1: W293 [*] Blank line contains whitespace
docs/contributing/tools/profiling/tardis_profiling_threads.ipynb:cell 4:24:1: W293 [*] Blank line contains whitespace
docs/contributing/tools/profiling/tardis_profiling_threads.ipynb:cell 4:26:1: W293 [*] Blank line contains whitespace
docs/contributing/tools/profiling/tardis_profiling_threads.ipynb:cell 4:32:21: W291 [*] Trailing whitespace
docs/contributing/tools/profiling/tardis_profiling_threads.ipynb:cell 4:35:5: D202 [*] No blank lines allowed after function docstring (found 1)
docs/contributing/tools/profiling/tardis_profiling_threads.ipynb:cell 4:37:1: W293 Blank line contains whitespace
docs/contributing/tools/profiling/tardis_profiling_threads.ipynb:cell 4:44:1: W293 [*] Blank line contains whitespace
docs/contributing/tools/profiling/tardis_profiling_threads.ipynb:cell 4:54:5: D202 [*] No blank lines allowed after function docstring (found 1)
docs/contributing/tools/profiling/tardis_profiling_threads.ipynb:cell 4:57:1: W293 Blank line contains whitespace
docs/contributing/tools/profiling/tardis_profiling_threads.ipynb:cell 4:63:1: W293 Blank line contains whitespace
docs/contributing/tools/profiling/tardis_profiling_threads.ipynb:cell 4:68:1: W293 [*] Blank line contains whitespace
docs/contributing/tools/profiling/tardis_profiling_threads.ipynb:cell 4:75:5: RET505 [*] Unnecessary `elif` after `return` statement
docs/contributing/tools/profiling/tardis_profiling_threads.ipynb:cell 7:1:32: W291 [*] Trailing whitespace
docs/contributing/tools/profiling/tardis_profiling_threads.ipynb:cell 7:2:35: W291 [*] Trailing whitespace
docs/contributing/tools/profiling/tardis_profiling_threads.ipynb:cell 7:3:37: W291 [*] Trailing whitespace
docs/contributing/tools/profiling/tardis_profiling_threads.ipynb:cell 7:4:41: W291 [*] Trailing whitespace
docs/contributing/tools/profiling/tardis_profiling_threads.ipynb:cell 7:5:31: W291 [*] Trailing whitespace
docs/contributing/tools/profiling/tardis_profiling_threads.ipynb:cell 7:6:31: W291 [*] Trailing whitespace
docs/contributing/tools/profiling/tardis_profiling_threads.ipynb:cell 7:8:5: D202 [*] No blank lines allowed after function docstring (found 1)
docs/contributing/tools/profiling/tardis_profiling_threads.ipynb:cell 7:11:1: W293 Blank line contains whitespace
docs/contributing/tools/profiling/tardis_profiling_threads.ipynb:cell 7:13:112: W291 Trailing whitespace
docs/contributing/tools/profiling/tardis_profiling_threads.ipynb:cell 7:15:1: W293 Blank line contains whitespace
docs/contributing/tools/profiling/tardis_profiling_threads.ipynb:cell 7:49:1: W293 [*] Blank line contains whitespace
docs/contributing/tools/profiling/tardis_profiling_threads.ipynb:cell 7:54:33: UP032 [*] Use f-string instead of `format` call
docs/contributing/tools/profiling/tardis_profiling_threads.ipynb:cell 7:56:33: UP032 [*] Use f-string instead of `format` call
docs/contributing/tools/profiling/tardis_profiling_threads.ipynb:cell 7:57:1: W293 [*] Blank line contains whitespace
docs/contributing/tools/profiling/tardis_profiling_threads.ipynb:cell 8:9:25: UP015 [*] Unnecessary mode argument
docs/contributing/tools/profiling/tardis_profiling_threads.ipynb:cell 8:12:29: UP015 [*] Unnecessary mode argument
docs/contributing/tools/profiling/tardis_profiling_threads.ipynb:cell 8:16:19: C416 Unnecessary list comprehension (rewrite using `list()`)
docs/contributing/tools/profiling/tardis_profiling_threads.ipynb:cell 8:17:23: C416 Unnecessary list comprehension (rewrite using `list()`)
docs/contributing/tools/profiling/tardis_profiling_threads.ipynb:cell 9:2:5: D202 [*] No blank lines allowed after function docstring (found 1)
docs/contributing/tools/profiling/tardis_profiling_threads.ipynb:cell 9:4:1: W293 Blank line contains whitespace
docs/contributing/tools/profiling/tardis_profiling_threads.ipynb:cell 9:11:1: W293 Blank line contains whitespace
docs/contributing/tools/profiling/tardis_profiling_threads.ipynb:cell 10:2:5: D202 [*] No blank lines allowed after function docstring (found 1)
docs/contributing/tools/profiling/tardis_profiling_threads.ipynb:cell 10:4:1: W293 Blank line contains whitespace
docs/contributing/tools/profiling/tardis_profiling_threads.ipynb:cell 10:18:1: W293 [*] Blank line contains whitespace
docs/contributing/tools/profiling/tardis_profiling_threads.ipynb:cell 10:30:1: W293 [*] Blank line contains whitespace
docs/contributing/tools/profiling/tardis_profiling_threads.ipynb:cell 10:44:1: W293 [*] Blank line contains whitespace
docs/contributing/tools/profiling/tardis_profiling_threads.ipynb:cell 10:45:43: UP032 [*] Use f-string instead of `format` call
docs/how-to/code_comparison/plasma_compare/plasma_compare.ipynb:cell 2:1:1: I001 [*] Import block is un-sorted or un-formatted
docs/how-to/code_comparison/plasma_compare/plasma_compare.ipynb:cell 2:3:29: F401 [*] `IPython.display.FileLinks` imported but unused
docs/how-to/code_comparison/plasma_compare/plasma_compare.ipynb:cell 13:3:7: F821 Undefined name `figure`
docs/how-to/code_comparison/plasma_compare/plasma_compare.ipynb:cell 13:6:1: F821 Undefined name `xlabel`
docs/how-to/code_comparison/plasma_compare/plasma_compare.ipynb:cell 13:7:1: F821 Undefined name `ylabel`
docs/how-to/code_comparison/toy_models/reading blondin toymodel.ipynb:cell 2:1:1: I001 [*] Import block is un-sorted or un-formatted
docs/how-to/code_comparison/toy_models/reading blondin toymodel.ipynb:cell 3:15:15: F821 Undefined name `df`
docs/how-to/code_comparison/toy_models/reading blondin toymodel.ipynb:cell 3:19:19: F821 Undefined name `df`
docs/how-to/code_comparison/toy_models/reading blondin toymodel.ipynb:cell 3:24:38: W605 [*] Invalid escape sequence: `\[`
docs/how-to/code_comparison/toy_models/reading blondin toymodel.ipynb:cell 3:24:42: W605 [*] Invalid escape sequence: `\]`
docs/how-to/code_comparison/toy_models/reading blondin toymodel.ipynb:cell 7:1:1: F821 Undefined name `blondin_dict`
docs/how-to/code_comparison/toy_models/reading blondin toymodel.ipynb:cell 7:2:1: F821 Undefined name `blondin_dict`
docs/how-to/code_comparison/toy_models/reading blondin toymodel.ipynb:cell 8:1:13: UP030 Use implicit references for positional format fields
docs/how-to/code_comparison/toy_models/reading blondin toymodel.ipynb:cell 8:1:13: UP032 [*] Use f-string instead of `format` call
docs/how-to/code_comparison/toy_models/reading blondin toymodel.ipynb:cell 8:1:51: F821 Undefined name `blondin_dict`
docs/how-to/code_comparison/toy_models/reading blondin toymodel.ipynb:cell 8:1:92: F821 Undefined name `blondin_csv`
docs/how-to/code_comparison/toy_models/reading blondin toymodel.ipynb:cell 14:3:1: F821 Undefined name `plot`
docs/how-to/code_comparison/toy_models/reading blondin toymodel.ipynb:cell 14:5:1: F821 Undefined name `plot`
docs/how-to/code_comparison/toy_models/reading blondin toymodel.ipynb:cell 14:5:101: W291 [*] Trailing whitespace
docs/how-to/code_comparison/toy_models/reading blondin toymodel.ipynb:cell 14:6:1: F821 Undefined name `legend`
docs/how-to/code_comparison/toy_models/reading blondin toymodel.ipynb:cell 14:7:1: F821 Undefined name `xlim`
docs/how-to/code_comparison/toy_models/reading blondin toymodel.ipynb:cell 18:1:13: UP030 Use implicit references for positional format fields
docs/how-to/code_comparison/toy_models/reading blondin toymodel.ipynb:cell 18:1:13: UP032 [*] Use f-string instead of `format` call
docs/io/configuration/components/models/Custom_TARDIS_Model_Tutorial.ipynb:cell 2:1:1: I001 [*] Import block is un-sorted or un-formatted
docs/io/configuration/components/models/Custom_TARDIS_Model_Tutorial.ipynb:cell 2:2:29: F401 [*] `matplotlib.pyplot` imported but unused
docs/io/configuration/components/models/Custom_TARDIS_Model_Tutorial.ipynb:cell 2:3:17: F401 [*] `numpy` imported but unused
docs/io/configuration/components/models/converters/arepo_to_tardis.ipynb:cell 6:1:1: I001 [*] Import block is un-sorted or un-formatted
docs/io/configuration/components/models/converters/arepo_to_tardis.ipynb:cell 6:1:17: F401 [*] `numpy` imported but unused
docs/io/configuration/components/models/converters/arepo_to_tardis.ipynb:cell 6:4:8: F401 [*] `json` imported but unused
docs/io/grid/how_to_TardisGridTutorial.ipynb:cell 2:1:1: I001 [*] Import block is un-sorted or un-formatted
docs/io/grid/how_to_TardisGridTutorial.ipynb:cell 7:2:74: W291 [*] Trailing whitespace
docs/io/grid/how_to_TardisGridTutorial.ipynb:cell 14:1:47: W291 [*] Trailing whitespace
docs/io/grid/how_to_TardisGridTutorial.ipynb:cell 14:4:46: E703 [*] Statement ends with an unnecessary semicolon
docs/io/grid/how_to_TardisGridTutorial.ipynb:cell 15:2:55: W291 [*] Trailing whitespace
docs/io/optional/how_to_custom_source.ipynb:cell 3:2:1: I001 [*] Import block is un-sorted or un-formatted
docs/io/optional/tutorial_callback_example.ipynb:cell 5:2:1: I001 [*] Import block is un-sorted or un-formatted
docs/io/optional/tutorial_callback_example.ipynb:cell 5:5:1: E402 Module level import not at top of cell
docs/io/optional/tutorial_callback_example.ipynb:cell 5:6:1: E402 Module level import not at top of cell
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docs/io/output/how_to_physical_quantities.ipynb:cell 4:2:1: I001 [*] Import block is un-sorted or un-formatted
docs/io/output/how_to_plasma_graph.ipynb:cell 3:2:1: I001 [*] Import block is un-sorted or un-formatted
docs/io/output/how_to_plasma_graph.ipynb:cell 19:1:39: UP015 [*] Unnecessary mode argument
docs/io/output/how_to_rpacket_tracking.ipynb:cell 12:1:62: W291 [*] Trailing whitespace
docs/io/output/how_to_to_hdf.ipynb:cell 5:1:19: S108 Probable insecure usage of temporary file or directory: "/tmp/full_example.hdf"
docs/io/output/how_to_to_hdf.ipynb:cell 7:3:20: S108 Probable insecure usage of temporary file or directory: "/tmp/full_example.hdf"
docs/io/output/how_to_to_hdf.ipynb:cell 14:1:26: S108 Probable insecure usage of temporary file or directory: "/tmp/plasma_output.hdf"
docs/io/output/how_to_to_hdf.ipynb:cell 15:1:8: ICN001 `pandas` should be imported as `pd`
docs/io/output/how_to_to_hdf.ipynb:cell 15:3:31: S108 Probable insecure usage of temporary file or directory: "/tmp/plasma_output.hdf"
docs/io/output/how_to_to_hdf.ipynb:cell 17:1:1: I001 [*] Import block is un-sorted or un-formatted
docs/io/output/how_to_to_hdf.ipynb:cell 17:2:26: S108 Probable insecure usage of temporary file or directory: "/tmp/plasma_input_output.hdf"
docs/io/output/how_to_to_hdf.ipynb:cell 18:1:8: ICN001 `pandas` should be imported as `pd`
docs/io/output/how_to_to_hdf.ipynb:cell 18:3:37: S108 Probable insecure usage of temporary file or directory: "/tmp/plasma_input_output.hdf"
docs/io/output/how_to_to_hdf.ipynb:cell 20:1:36: S108 Probable insecure usage of temporary file or directory: "/tmp/model_output.hdf"
docs/io/output/how_to_to_hdf.ipynb:cell 21:1:8: ICN001 `pandas` should be imported as `pd`
docs/io/output/how_to_to_hdf.ipynb:cell 21:3:30: S108 Probable insecure usage of temporary file or directory: "/tmp/model_output.hdf"
docs/io/output/how_to_to_hdf.ipynb:cell 23:1:29: S108 Probable insecure usage of temporary file or directory: "/tmp/transport_output.hdf"
docs/io/output/how_to_to_hdf.ipynb:cell 24:1:8: ICN001 `pandas` should be imported as `pd`
docs/io/output/how_to_to_hdf.ipynb:cell 24:3:34: S108 Probable insecure usage of temporary file or directory: "/tmp/transport_output.hdf"
docs/multiindex_isotope_decay_data.ipynb:cell 1:2:1: I001 [*] Import block is un-sorted or un-formatted
docs/multiindex_isotope_decay_data.ipynb:cell 1:2:21: F401 [*] `pathlib.Path` imported but unused
docs/multiindex_isotope_decay_data.ipynb:cell 7:5:70: W291 [*] Trailing whitespace
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docs/physics/plasma/equilibrium/ionization_solution_comparison.ipynb:cell 11:1:1: I001 [*] Import block is un-sorted or un-formatted
docs/physics/plasma/equilibrium/ionization_solution_comparison.ipynb:cell 14:1:1: I001 [*] Import block is un-sorted or un-formatted
docs/physics/plasma/equilibrium/ionization_solution_comparison.ipynb:cell 14:11:21: UP008 Use `super()` instead of `super(__class__, self)`
docs/physics/plasma/equilibrium/ionization_solution_comparison.ipynb:cell 46:4:188: W291 [*] Trailing whitespace
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docs/physics/plasma/equilibrium/ionization_solution_comparison.ipynb:cell 54:2:5: D204 [*] 1 blank line required after class docstring
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docs/physics/plasma/equilibrium/ionization_solutions.ipynb:cell 3:6:34: UP034 [*] Avoid extraneous parentheses
docs/physics_walkthrough/montecarlo/initialization.ipynb:cell 2:1:1: I001 [*] Import block is un-sorted or un-formatted
docs/physics_walkthrough/nlte/nlte_rates.ipynb:cell 1:1:1: I001 [*] Import block is un-sorted or un-formatted
docs/physics_walkthrough/nlte/nlte_rates.ipynb:cell 1:1:32: F401 [*] `tardis.plasma.nlte.nlte_data` imported but unused
docs/physics_walkthrough/nlte/nlte_rates.ipynb:cell 1:5:19: F401 [*] `scipy.sparse` imported but unused
docs/physics_walkthrough/plasma/construction_simple_plasma.ipynb:cell 8:1:1: F821 Undefined name `plasma_solver`
docs/physics_walkthrough/plasma/equilibrium/comparison.ipynb:cell 31:1:1: I001 [*] Import block is un-sorted or un-formatted
docs/physics_walkthrough/pyplot/lte_ionization_balance.py:1:1: I001 [*] Import block is un-sorted or un-formatted
docs/physics_walkthrough/pyplot/lte_ionization_balance.py:1:21: F401 [*] `pathlib.Path` imported but unused
docs/physics_walkthrough/pyplot/lte_ionization_balance.py:22:31: F821 Undefined name `atom_fname`
docs/physics_walkthrough/pyplot/lte_ionization_balance.py:73:9: UP031 Use format specifiers instead of percent format
docs/physics_walkthrough/pyplot/lte_ionization_balance.py:74:15: UP031 Use format specifiers instead of percent format
docs/physics_walkthrough/pyplot/nebular_ionization_balance.py:1:1: I001 [*] Import block is un-sorted or un-formatted
docs/physics_walkthrough/pyplot/nebular_ionization_balance.py:33:18: F821 Undefined name `plasma`
docs/physics_walkthrough/pyplot/nebular_ionization_balance.py:71:9: UP031 Use format specifiers instead of percent format
docs/physics_walkthrough/pyplot/nebular_ionization_balance.py:72:15: UP031 Use format specifiers instead of percent format
docs/physics_walkthrough/pyplot/nebular_ionization_balance.py:117:9: UP031 Use format specifiers instead of percent format
docs/physics_walkthrough/pyplot/nebular_ionization_balance.py:118:15: UP031 Use format specifiers instead of percent format
docs/physics_walkthrough/pyplot/plot_mu_in_out_packet.py:1:1: F403 `from pylab import *` used; unable to detect undefined names
docs/physics_walkthrough/pyplot/plot_mu_in_out_packet.py:1:1: I001 [*] Import block is un-sorted or un-formatted
docs/physics_walkthrough/pyplot/plot_mu_in_out_packet.py:5:1: PLW0127 Self-assignment of variable `x`
docs/physics_walkthrough/pyplot/plot_mu_in_out_packet.py:5:4: PLW0127 Self-assignment of variable `y`
docs/physics_walkthrough/pyplot/plot_mu_in_out_packet.py:5:8: PLW0128 Redeclared variable `x` in assignment
docs/physics_walkthrough/pyplot/plot_mu_in_out_packet.py:5:11: PLW0128 Redeclared variable `y` in assignment
docs/physics_walkthrough/pyplot/plot_mu_in_out_packet.py:5:15: F405 `mgrid` may be undefined, or defined from star imports
docs/physics_walkthrough/pyplot/plot_mu_in_out_packet.py:10:1: F405 `xlabel` may be undefined, or defined from star imports
docs/physics_walkthrough/pyplot/plot_mu_in_out_packet.py:11:1: F405 `ylabel` may be undefined, or defined from star imports
docs/physics_walkthrough/pyplot/plot_mu_in_out_packet.py:12:1: F405 `imshow` may be undefined, or defined from star imports
docs/physics_walkthrough/pyplot/plot_mu_in_out_packet.py:12:8: F405 `np` may be undefined, or defined from star imports
docs/physics_walkthrough/pyplot/plot_mu_in_out_packet.py:13:1: F405 `colorbar` may be undefined, or defined from star imports
docs/physics_walkthrough/pyplot/plot_mu_in_out_packet.py:14:1: F405 `show` may be undefined, or defined from star imports
docs/physics_walkthrough/setup/model.ipynb:cell 2:2:1: I001 [*] Import block is un-sorted or un-formatted
docs/physics_walkthrough/setup/model.ipynb:cell 25:19:12: F541 [*] f-string without any placeholders
docs/physics_walkthrough/setup/setup_example.ipynb:cell 2:2:1: I001 [*] Import block is un-sorted or un-formatted
docs/physics_walkthrough/spectrum/basic.ipynb:cell 3:1:1: I001 [*] Import block is un-sorted or un-formatted
docs/physics_walkthrough/tardisgamma/decayenergy.ipynb:cell 2:1:1: I001 [*] Import block is un-sorted or un-formatted
docs/physics_walkthrough/tardisgamma/decayenergy.ipynb:cell 2:13:47: F401 [*] `tardis.energy_input.energy_source.get_nuclear_lines_database` imported but unused
docs/physics_walkthrough/tardisgamma/decayenergy.ipynb:cell 2:15:62: F401 [*] `tardis.energy_input.tests.test_gamma_ray_channel.test_total_energy_production` imported but unused
docs/physics_walkthrough/tardisgamma/opacities.ipynb:cell 2:1:1: I001 [*] Import block is un-sorted or un-formatted
docs/physics_walkthrough/tardisgamma/opacities.ipynb:cell 7:5:31: W291 [*] Trailing whitespace
docs/physics_walkthrough/update_and_conv/update_and_conv.ipynb:cell 7:1:1: I001 [*] Import block is un-sorted or un-formatted
docs/physics_walkthrough/update_and_conv/update_and_conv.ipynb:cell 18:1:69: W291 [*] Trailing whitespace
docs/physics_walkthrough/update_and_conv/update_and_conv.ipynb:cell 26:1:50: W291 [*] Trailing whitespace
docs/physics_walkthrough/update_and_conv/update_and_conv.ipynb:cell 31:11:1: E402 Module level import not at top of cell
docs/physics_walkthrough/update_and_conv/update_and_conv.ipynb:cell 31:11:1: I001 [*] Import block is un-sorted or un-formatted
docs/quickstart.ipynb:cell 12:1:39: W291 [*] Trailing whitespace
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docs/reference/liv_plot_notebook.ipynb:cell 27:6:55: W291 [*] Trailing whitespace
docs/resources/research_done_using_TARDIS/ads.ipynb:cell 1:1:1: I001 [*] Import block is un-sorted or un-formatted
docs/resources/research_done_using_TARDIS/ads.ipynb:cell 2:2:39: W291 [*] Trailing whitespace
docs/resources/research_done_using_TARDIS/ads.ipynb:cell 2:12:11: S113 Probable use of `requests` call without timeout
docs/resources/research_done_using_TARDIS/ads.ipynb:cell 2:12:60: W291 [*] Trailing whitespace
docs/resources/research_done_using_TARDIS/ads.ipynb:cell 2:28:23: S113 Probable use of `requests` call without timeout
docs/resources/research_done_using_TARDIS/ads.ipynb:cell 2:28:76: W291 [*] Trailing whitespace
docs/resources/research_done_using_TARDIS/ads.ipynb:cell 4:7:16: Q003 [*] Change outer quotes to avoid escaping inner quotes
docs/tutorials/high_energy/run_high_energy_workflow.ipynb:cell 1:5:21: PLC0414 Import alias does not rename original package
docs/tutorials/high_energy/run_high_energy_workflow.ipynb:cell 11:4:41: F821 Undefined name `const`
docs/tutorials/high_energy/run_high_energy_workflow.ipynb:cell 11:10:47: F821 Undefined name `const`
docs/tutorials/run_montecarlo_transport.ipynb:cell 2:1:1: I001 [*] Import block is un-sorted or un-formatted
docs/tutorials/run_montecarlo_transport.ipynb:cell 2:1:8: F401 [*] `os` imported but unused
docs/tutorials/run_montecarlo_transport.ipynb:cell 10:10:69: W291 [*] Trailing whitespace
docs/tutorials/run_montecarlo_transport.ipynb:cell 13:1:1: I001 [*] Import block is un-sorted or un-formatted
docs/tutorials/run_montecarlo_transport.ipynb:cell 13:1:17: F811 [*] Redefinition of unused `np` from cell 2, line 5
docs/tutorials/run_montecarlo_transport.ipynb:cell 13:1:17: F401 [*] `numpy` imported but unused
docs/tutorials/run_montecarlo_transport.ipynb:cell 13:7:68: F401 [*] `tardis.transport.montecarlo.packets.packet_collections.PacketCollection` imported but unused
docs/tutorials/run_montecarlo_transport.ipynb:cell 16:1:1: I001 [*] Import block is un-sorted or un-formatted
docs/workflows/simple_workflow.ipynb:cell 4:1:1: I001 [*] Import block is un-sorted or un-formatted
docs/workflows/simple_workflow_equilibrium.ipynb:cell 2:1:1: I001 [*] Import block is un-sorted or un-formatted
docs/workflows/simple_workflow_equilibrium.ipynb:cell 2:2:8: F401 [*] `tardis` imported but unused
docs/workflows/standard_workflow.ipynb:cell 4:1:1: I001 [*] Import block is un-sorted or un-formatted
docs/workflows/v_inner_solver_workflow.ipynb:cell 4:1:1: I001 [*] Import block is un-sorted or un-formatted
docs/workflows/v_inner_solver_workflow.ipynb:cell 5:1:1: I001 [*] Import block is un-sorted or un-formatted
docs/workflows/v_inner_solver_workflow.ipynb:cell 8:8:64: W291 [*] Trailing whitespace
docs/workflows/v_inner_solver_workflow.ipynb:cell 14:14:45: W291 [*] Trailing whitespace
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docs/workflows/workflow_notebook.ipynb:cell 2:1:1: I001 [*] Import block is un-sorted or un-formatted
tardis/__init__.py:2:1: I001 [*] Import block is un-sorted or un-formatted
tardis/__init__.py:12:11: RUF022 [*] `__all__` is not sorted
tardis/__init__.py:29:1: E402 Module level import not at top of file
tardis/analysis.py:97:9: E722 Do not use bare `except`
tardis/analysis.py:111:9: E722 Do not use bare `except`
tardis/analysis.py:122:9: E722 Do not use bare `except`
tardis/analysis.py:137:9: E722 Do not use bare `except`
tardis/analysis.py:375:9: RET505 [*] Unnecessary `else` after `return` statement
tardis/analysis.py:397:9: RET505 [*] Unnecessary `else` after `return` statement
tardis/analysis.py:422:9: RET505 [*] Unnecessary `else` after `return` statement
tardis/analysis/opacities.py:1:1: INP001 File `tardis/analysis/opacities.py` is part of an implicit namespace package. Add an `__init__.py`.
tardis/base.py:106:13: PLW0127 Self-assignment of variable `atom_data`
tardis/conftest.py:1:1: I001 [*] Import block is un-sorted or un-formatted
tardis/conftest.py:12:1: F403 `from tardis.tests.fixtures.atom_data import *` used; unable to detect undefined names
tardis/conftest.py:17:36: F401 [*] `tardis.tests.test_util.monkeysession` imported but unused
tardis/conftest.py:20:12: F401 `tardisbase` imported but unused; consider using `importlib.util.find_spec` to test for availability
tardis/conftest.py:41:49: PGH004 Use specific rule codes when using `noqa`
tardis/conftest.py:43:9: F821 Undefined name `pytest_report_header`
tardis/constants.py:1:1: F403 `from astropy.constants.astropyconst13 import *` used; unable to detect undefined names
tardis/energy_input/docs/working_gamma_ray_test.ipynb:cell 1:2:1: I001 [*] Import block is un-sorted or un-formatted
tardis/energy_input/docs/working_gamma_ray_test.ipynb:cell 1:3:18: F401 [*] `pandas` imported but unused
tardis/energy_input/docs/working_gamma_ray_test.ipynb:cell 1:6:29: F401 [*] `astropy.constants` imported but unused
tardis/energy_input/docs/working_gamma_ray_test.ipynb:cell 1:7:25: F401 [*] `astropy.units` imported but unused
tardis/energy_input/docs/working_gamma_ray_test.ipynb:cell 2:2:1: I001 [*] Import block is un-sorted or un-formatted
tardis/energy_input/docs/working_gamma_ray_test.ipynb:cell 7:5:70: W291 [*] Trailing whitespace
tardis/energy_input/docs/working_gamma_ray_test.ipynb:cell 9:3:96: W291 [*] Trailing whitespace
tardis/energy_input/docs/working_gamma_ray_test.ipynb:cell 9:4:99: W291 [*] Trailing whitespace
tardis/energy_input/docs/working_gamma_ray_test.ipynb:cell 9:6:78: W291 [*] Trailing whitespace
tardis/energy_input/docs/working_gamma_ray_test.ipynb:cell 10:2:65: W605 [*] Invalid escape sequence: `\g`
tardis/energy_input/energy_source.py:1:1: I001 [*] Import block is un-sorted or un-formatted
tardis/energy_input/energy_source.py:113:16: C416 Unnecessary list comprehension (rewrite using `list()`)
tardis/energy_input/energy_source.py:256:5: D202 [*] No blank lines allowed after function docstring (found 1)
tardis/energy_input/gamma_ray_estimators.py:47:18: F821 Undefined name `GET_NEAREST_LINE_REDWARD_FUNCTION`
tardis/energy_input/gamma_ray_transport.py:3:25: F401 [*] `astropy.units` imported but unused
tardis/energy_input/gamma_ray_transport.py:5:18: F401 [*] `pandas` imported but unused
tardis/energy_input/gamma_ray_transport.py:6:28: F401 [*] `radioactivedecay` imported but unused
tardis/energy_input/gamma_ray_transport.py:12:40: F401 [*] `tardis.opacities.opacities.M_P` imported but unused
tardis/energy_input/gamma_ray_transport.py:82:9: PERF403 Use a dictionary comprehension instead of a for-loop
tardis/energy_input/main_gamma_ray_loop.py:1:1: I001 [*] Import block is un-sorted or un-formatted
tardis/energy_input/main_gamma_ray_loop.py:31:23: UP007 [*] Use `X | Y` for type annotations
tardis/energy_input/samplers.py:1:1: I001 [*] Import block is un-sorted or un-formatted
tardis/energy_input/samplers.py:155:49: NPY201 `np.trapz` will be removed in NumPy 2.0. Use `numpy.trapezoid` on NumPy 2.0, or ignore this warning on earlier versions.
tardis/energy_input/tests/test_energy_source.py:1:1: I001 [*] Import block is un-sorted or un-formatted
tardis/energy_input/tests/test_energy_source.py:36:5: PT015 Assertion always fails, replace with `pytest.fail()`
tardis/energy_input/tests/test_energy_source.py:36:12: B011 Do not `assert False` (`python -O` removes these calls), raise `AssertionError()`
tardis/energy_input/tests/test_energy_source.py:42:5: PT015 Assertion always fails, replace with `pytest.fail()`
tardis/energy_input/tests/test_energy_source.py:42:12: B011 Do not `assert False` (`python -O` removes these calls), raise `AssertionError()`
tardis/energy_input/tests/test_energy_source.py:48:5: PT015 Assertion always fails, replace with `pytest.fail()`
tardis/energy_input/tests/test_energy_source.py:48:12: B011 Do not `assert False` (`python -O` removes these calls), raise `AssertionError()`
tardis/energy_input/tests/test_gamma_ray_channel.py:1:1: I001 [*] Import block is un-sorted or un-formatted
tardis/energy_input/tests/test_gamma_ray_channel.py:117:9: B020 Loop control variable `isotope_dict` overrides iterable it iterates
tardis/energy_input/tests/test_gamma_ray_packet_source_minimal.py:3:1: I001 [*] Import block is un-sorted or un-formatted
tardis/energy_input/tests/test_gamma_ray_packet_source_minimal.py:5:17: F401 [*] `numpy` imported but unused
tardis/energy_input/tests/test_gamma_ray_transport.py:4:17: F401 [*] `numpy` imported but unused
tardis/energy_input/tests/test_gamma_ray_transport.py:5:25: F401 [*] `numpy.testing` imported but unused
tardis/energy_input/tests/test_gamma_ray_transport.py:7:28: F401 [*] `radioactivedecay` imported but unused
tardis/energy_input/tests/test_gamma_ray_transport.py:8:30: F401 [*] `radioactivedecay.converters` imported but unused
tardis/energy_input/tests/test_gamma_ray_transport.py:11:5: F401 [*] `tardis.energy_input.gamma_ray_channel.calculate_total_decays` imported but unused
tardis/energy_input/tests/test_gamma_ray_transport.py:12:5: F401 [*] `tardis.energy_input.gamma_ray_channel.create_inventories_dict` imported but unused
tardis/energy_input/tests/test_gamma_ray_transport.py:13:5: F401 [*] `tardis.energy_input.gamma_ray_channel.create_isotope_dicts` imported but unused
tardis/energy_input/tests/test_util.py:38:5: PT015 Assertion always fails, replace with `pytest.fail()`
tardis/energy_input/tests/test_util.py:38:12: B011 Do not `assert False` (`python -O` removes these calls), raise `AssertionError()`
tardis/energy_input/tests/test_util.py:44:5: PT015 Assertion always fails, replace with `pytest.fail()`
tardis/energy_input/tests/test_util.py:44:12: B011 Do not `assert False` (`python -O` removes these calls), raise `AssertionError()`
tardis/energy_input/tests/test_util.py:50:5: PT015 Assertion always fails, replace with `pytest.fail()`
tardis/energy_input/tests/test_util.py:50:12: B011 Do not `assert False` (`python -O` removes these calls), raise `AssertionError()`
tardis/energy_input/tests/test_util.py:56:5: PT015 Assertion always fails, replace with `pytest.fail()`
tardis/energy_input/tests/test_util.py:56:12: B011 Do not `assert False` (`python -O` removes these calls), raise `AssertionError()`
tardis/energy_input/transport/GXPacket.py:1:1: N999 Invalid module name: 'GXPacket'
tardis/energy_input/transport/GXPacket.py:7:42: F401 [*] `tardis.energy_input.samplers.sample_decay_time` imported but unused
tardis/energy_input/transport/GXPacket.py:7:61: F401 [*] `tardis.energy_input.samplers.sample_energy` imported but unused
tardis/energy_input/transport/GXPacket.py:9:5: F401 [*] `tardis.energy_input.util.H_CGS_KEV` imported but unused
tardis/energy_input/transport/GXPacket.py:10:5: F401 [*] `tardis.energy_input.util.doppler_factor_3d` imported but unused
tardis/energy_input/transport/GXPacket.py:11:5: F401 [*] `tardis.energy_input.util.get_index` imported but unused
tardis/energy_input/transport/GXPacket.py:12:5: F401 [*] `tardis.energy_input.util.get_random_unit_vector` imported but unused
tardis/energy_input/transport/tests/conftest.py:16:12: S604 Function call with truthy `shell` parameter identified, security issue
tardis/energy_input/transport/tests/test_gamma_ray_grid.py:12:5: PT015 Assertion always fails, replace with `pytest.fail()`
tardis/energy_input/transport/tests/test_gamma_ray_grid.py:12:12: B011 Do not `assert False` (`python -O` removes these calls), raise `AssertionError()`
tardis/energy_input/transport/tests/test_gamma_ray_grid.py:18:5: PT015 Assertion always fails, replace with `pytest.fail()`
tardis/energy_input/transport/tests/test_gamma_ray_grid.py:18:12: B011 Do not `assert False` (`python -O` removes these calls), raise `AssertionError()`
tardis/energy_input/transport/tests/test_gamma_ray_interactions.py:16:5: PT015 Assertion always fails, replace with `pytest.fail()`
tardis/energy_input/transport/tests/test_gamma_ray_interactions.py:16:12: B011 Do not `assert False` (`python -O` removes these calls), raise `AssertionError()`
tardis/energy_input/transport/tests/test_gamma_ray_interactions.py:22:5: PT015 Assertion always fails, replace with `pytest.fail()`
tardis/energy_input/transport/tests/test_gamma_ray_interactions.py:22:12: B011 Do not `assert False` (`python -O` removes these calls), raise `AssertionError()`
tardis/energy_input/util.py:444:5: RET505 [*] Unnecessary `elif` after `return` statement
tardis/energy_input/util.py:455:5: D202 [*] No blank lines allowed after function docstring (found 1)
tardis/energy_input/util.py:457:5: D411 [*] Missing blank line before section ("Parameters")
tardis/grid/__init__.py:7:1: F403 `from tardis.grid.base import *` used; unable to detect undefined names
tardis/grid/base.py:30:9: PLR1704 Redefining argument with the local name `key`
tardis/grid/tests/test_grid.py:1:1: INP001 File `tardis/grid/tests/test_grid.py` is part of an implicit namespace package. Add an `__init__.py`.
tardis/grid/tests/test_grid.py:29:5: PLC0206 Extracting value from dictionary without calling `.items()`
tardis/gui/__init__.py:4:57: W291 Trailing whitespace
tardis/gui/__init__.py:5:60: W291 Trailing whitespace
tardis/gui/__init__.py:6:56: W291 Trailing whitespace
tardis/gui/datahandler.py:1:1: I001 [*] Import block is un-sorted or un-formatted
tardis/gui/datahandler.py:4:17: F401 [*] `numpy` imported but unused
tardis/gui/datahandler.py:5:8: ICN001 `matplotlib` should be imported as `mpl`
tardis/gui/datahandler.py:6:28: F401 [*] `matplotlib.pylab` imported but unused
tardis/gui/datahandler.py:10:5: I001 [*] Import block is un-sorted or un-formatted
tardis/gui/datahandler.py:12:5: I001 [*] Import block is un-sorted or un-formatted
tardis/gui/datahandler.py:19:1: I001 [*] Import block is un-sorted or un-formatted
tardis/gui/datahandler.py:19:8: F401 [*] `yaml` imported but unused
tardis/gui/datahandler.py:21:20: F401 [*] `tardis.run_tardis` imported but unused
tardis/gui/datahandler.py:22:32: F401 [*] `tardis.gui.widgets.MatplotlibWidget` imported but unused
tardis/gui/datahandler.py:22:50: F401 [*] `tardis.gui.widgets.ModelViewer` imported but unused
tardis/gui/datahandler.py:22:63: F401 [*] `tardis.gui.widgets.ShellInfo` imported but unused
tardis/gui/datahandler.py:23:32: F401 [*] `tardis.gui.widgets.LineInfo` imported but unused
tardis/gui/datahandler.py:23:42: F401 [*] `tardis.gui.widgets.LineInteractionTables` imported but unused
tardis/gui/datahandler.py:37:12: UP004 [*] Class `Node` inherits from `object`
tardis/gui/datahandler.py:113:9: RET505 [*] Unnecessary `else` after `return` statement
tardis/gui/datahandler.py:145:9: RET505 [*] Unnecessary `else` after `return` statement
tardis/gui/datahandler.py:199:9: RET505 [*] Unnecessary `else` after `return` statement
tardis/gui/datahandler.py:203:9: D209 [*] Multi-line docstring closing quotes should be on a separate line
tardis/gui/datahandler.py:271:9: RET505 [*] Unnecessary `else` after `return` statement
tardis/gui/datahandler.py:412:9: RET505 [*] Unnecessary `elif` after `return` statement
tardis/gui/datahandler.py:436:9: RET505 [*] Unnecessary `else` after `return` statement
tardis/gui/datahandler.py:503:14: UP008 Use `super()` instead of `super(__class__, self)`
tardis/gui/datahandler.py:518:9: PLR0911 Too many return statements (8 > 6)
tardis/gui/datahandler.py:523:13: RET505 [*] Unnecessary `elif` after `return` statement
tardis/gui/datahandler.py:526:17: RET505 [*] Unnecessary `else` after `return` statement
tardis/gui/datahandler.py:536:13: RET505 [*] Unnecessary `elif` after `return` statement
tardis/gui/datahandler.py:547:9: RET505 [*] Unnecessary `elif` after `return` statement
tardis/gui/datahandler.py:552:9: D209 [*] Multi-line docstring closing quotes should be on a separate line
tardis/gui/datahandler.py:556:9: RET505 [*] Unnecessary `elif` after `return` statement
tardis/gui/interface.py:6:25: F401 [*] `PySide2.QtCore` imported but unused
tardis/gui/interface.py:16:5: I001 [*] Import block is un-sorted or un-formatted
tardis/gui/interface.py:23:1: I001 [*] Import block is un-sorted or un-formatted
tardis/gui/widgets.py:7:5: I001 [*] Import block is un-sorted or un-formatted
tardis/gui/widgets.py:9:5: I001 [*] Import block is un-sorted or un-formatted
tardis/gui/widgets.py:17:1: I001 [*] Import block is un-sorted or un-formatted
tardis/gui/widgets.py:17:8: ICN001 `matplotlib` should be imported as `mpl`
tardis/gui/widgets.py:18:1: F403 `from matplotlib.figure import *` used; unable to detect undefined names
tardis/gui/widgets.py:25:32: F401 [*] `matplotlib.patches.Circle` imported but unused
tardis/gui/widgets.py:30:30: F401 [*] `tardis.util` imported but unused
tardis/gui/widgets.py:37:9: D202 [*] No blank lines allowed after function docstring (found 1)
tardis/gui/widgets.py:44:23: F405 `Figure` may be undefined, or defined from star imports
tardis/gui/widgets.py:55:14: UP008 Use `super()` instead of `super(__class__, self)`
tardis/gui/widgets.py:56:14: UP008 Use `super()` instead of `super(__class__, self)`
tardis/gui/widgets.py:59:14: UP008 Use `super()` instead of `super(__class__, self)`
tardis/gui/widgets.py:165:27: C408 Unnecessary `dict()` call (rewrite as a literal)
tardis/gui/widgets.py:168:26: C408 Unnecessary `dict()` call (rewrite as a literal)
tardis/gui/widgets.py:169:23: C408 Unnecessary `dict()` call (rewrite as a literal)
tardis/gui/widgets.py:187:9: RET505 [*] Unnecessary `elif` after `return` statement
tardis/gui/widgets.py:199:14: UP008 Use `super()` instead of `super(__class__, self)`
tardis/gui/widgets.py:227:14: UP008 Use `super()` instead of `super(__class__, self)`
tardis/gui/widgets.py:230:22: F405 `yaml` may be undefined, or defined from star imports
tardis/gui/widgets.py:230:61: F405 `yaml` may be undefined, or defined from star imports
tardis/gui/widgets.py:354:24: F405 `TreeModel` may be undefined, or defined from star imports
tardis/gui/widgets.py:359:38: F405 `TreeDelegate` may be undefined, or defined from star imports
tardis/gui/widgets.py:430:35: UP024 [*] Replace aliased errors with `OSError`
tardis/gui/widgets.py:445:9: PIE790 [*] Unnecessary `pass` statement
tardis/gui/widgets.py:529:9: D202 [*] No blank lines allowed after function docstring (found 1)
tardis/gui/widgets.py:647:41: F405 `np` may be undefined, or defined from star imports
tardis/gui/widgets.py:656:9: D209 [*] Multi-line docstring closing quotes should be on a separate line
tardis/gui/widgets.py:659:41: F405 `np` may be undefined, or defined from star imports
tardis/gui/widgets.py:687:41: F405 `np` may be undefined, or defined from star imports
tardis/gui/widgets.py:814:14: UP008 Use `super()` instead of `super(__class__, self)`
tardis/gui/widgets.py:850:9: D209 [*] Multi-line docstring closing quotes should be on a separate line
tardis/gui/widgets.py:926:9: D209 [*] Multi-line docstring closing quotes should be on a separate line
tardis/gui/widgets.py:928:14: UP008 Use `super()` instead of `super(__class__, self)`
tardis/gui/widgets.py:1123:14: UP008 Use `super()` instead of `super(__class__, self)`
tardis/gui/widgets.py:1230:9: D202 [*] No blank lines allowed after function docstring (found 1)
tardis/io/atom_data/__init__.py:5:51: F401 `tardis.io.atom_data.atom_web_download.download_atom_data` imported but unused; consider removing, adding to `__all__`, or using a redundant alias
tardis/io/atom_data/__init__.py:6:38: F401 `tardis.io.atom_data.base.AtomData` imported but unused; consider removing, adding to `__all__`, or using a redundant alias
tardis/io/atom_data/atom_web_download.py:51:13: G004 Logging statement uses f-string
tardis/io/atom_data/atom_web_download.py:58:17: G004 Logging statement uses f-string
tardis/io/atom_data/base.py:1:1: I001 [*] Import block is un-sorted or un-formatted
tardis/io/atom_data/base.py:198:34: G004 Logging statement uses f-string
tardis/io/atom_data/base.py:260:17: G004 Logging statement uses f-string
tardis/io/atom_data/base.py:264:21: G001 Logging statement uses `str.format`
tardis/io/atom_data/base.py:708:17: G004 Logging statement uses f-string
tardis/io/atom_data/util.py:34:13: G004 Logging statement uses f-string
tardis/io/configuration/config_internal.py:8:20: N812 Lowercase `__path__` imported as non-lowercase `TARDIS_PATH`
tardis/io/configuration/config_internal.py:24:13: G004 Logging statement uses f-string
tardis/io/configuration/config_internal.py:36:9: LOG015 `critical()` call on root logger
tardis/io/configuration/config_internal.py:37:13: G004 Logging statement uses f-string
tardis/io/configuration/config_reader.py:1:1: I001 [*] Import block is un-sorted or un-formatted
tardis/io/configuration/config_reader.py:54:29: G004 Logging statement uses f-string
tardis/io/configuration/config_reader.py:118:9: RET505 [*] Unnecessary `else` after `return` statement
tardis/io/configuration/config_reader.py:142:13: RET505 [*] Unnecessary `else` after `return` statement
tardis/io/configuration/config_reader.py:219:29: G004 Logging statement uses f-string
tardis/io/configuration/tests/test_config_reader.py:1:1: INP001 File `tardis/io/configuration/tests/test_config_reader.py` is part of an implicit namespace package. Add an `__init__.py`.
tardis/io/configuration/tests/test_config_validator.py:1:1: INP001 File `tardis/io/configuration/tests/test_config_validator.py` is part of an implicit namespace package. Add an `__init__.py`.
tardis/io/configuration/tests/test_configuration_namespace.py:1:1: INP001 File `tardis/io/configuration/tests/test_configuration_namespace.py` is part of an implicit namespace package. Add an `__init__.py`.
tardis/io/hdf_writer_mixin.py:1:1: I001 [*] Import block is un-sorted or un-formatted
tardis/io/hdf_writer_mixin.py:5:1: UP035 `typing.Dict` is deprecated, use `dict` instead
tardis/io/hdf_writer_mixin.py:5:1: UP035 `typing.List` is deprecated, use `list` instead
tardis/io/hdf_writer_mixin.py:5:20: TC003 Move standard library import `typing.Any` into a type-checking block
tardis/io/hdf_writer_mixin.py:5:25: TC003 Move standard library import `typing.Union` into a type-checking block
tardis/io/hdf_writer_mixin.py:5:32: TC003 Move standard library import `typing.Optional` into a type-checking block
tardis/io/hdf_writer_mixin.py:5:42: TC003 Move standard library import `typing.Dict` into a type-checking block
tardis/io/hdf_writer_mixin.py:5:48: TC003 Move standard library import `typing.List` into a type-checking block
tardis/io/hdf_writer_mixin.py:19:9: ANN204 Missing return type annotation for special method `__new__`
tardis/io/hdf_writer_mixin.py:42:22: UP007 [*] Use `X | Y` for type annotations
tardis/io/hdf_writer_mixin.py:44:19: UP006 [*] Use `dict` instead of `Dict` for type annotation
tardis/io/hdf_writer_mixin.py:162:33: UP006 [*] Use `dict` instead of `Dict` for type annotation
tardis/io/hdf_writer_mixin.py:175:38: UP006 [*] Use `list` instead of `List` for type annotation
tardis/io/hdf_writer_mixin.py:209:27: UP007 [*] Use `X | Y` for type annotations
tardis/io/hdf_writer_mixin.py:211:15: UP007 [*] Use `X | Y` for type annotations
tardis/io/hdf_writer_mixin.py:213:17: UP007 [*] Use `X | Y` for type annotations
tardis/io/hdf_writer_mixin.py:252:33: UP006 [*] Use `dict` instead of `Dict` for type annotation
tardis/io/hdf_writer_mixin.py:283:27: UP007 [*] Use `X | Y` for type annotations
tardis/io/hdf_writer_mixin.py:285:15: UP007 [*] Use `X | Y` for type annotations
tardis/io/hdf_writer_mixin.py:288:17: UP007 [*] Use `X | Y` for type annotations
tardis/io/logger/__init__.py:3:4: W292 [*] No newline at end of file
tardis/io/logger/colored_logger.py:83:9: PLR1711 [*] Useless `return` statement at end of function
tardis/io/logger/colored_logger.py:83:15: W292 [*] No newline at end of file
tardis/io/logger/logger.py:1:1: I001 [*] Import block is un-sorted or un-formatted
tardis/io/logger/logger.py:4:17: F401 [*] `panel` imported but unused
tardis/io/logger/logger.py:6:18: F401 [*] `pandas` imported but unused
tardis/io/logger/logger.py:19:5: D204 [*] 1 blank line required after class docstring
tardis/io/logger/logger.py:20:1: W293 Blank line contains whitespace
tardis/io/logger/logger.py:56:5: D204 [*] 1 blank line required after class docstring
tardis/io/logger/logger.py:57:1: W293 Blank line contains whitespace
tardis/io/logger/logger.py:75:1: W293 Blank line contains whitespace
tardis/io/logger/logger.py:84:1: W293 Blank line contains whitespace
tardis/io/logger/logger.py:99:21: G004 Logging statement uses f-string
tardis/io/logger/logger.py:161:1: W293 Blank line contains whitespace
tardis/io/logger/logger.py:173:1: W293 [*] Blank line contains whitespace
tardis/io/logger/logger.py:178:85: W291 [*] Trailing whitespace
tardis/io/logger/logger.py:182:80: W291 [*] Trailing whitespace
tardis/io/logger/logger.py:185:1: W293 [*] Blank line contains whitespace
tardis/io/logger/logger.py:192:1: W293 [*] Blank line contains whitespace
tardis/io/logger/logger.py:198:1: W293 [*] Blank line contains whitespace
tardis/io/logger/logger.py:203:5: D204 [*] 1 blank line required after class docstring
tardis/io/logger/logger.py:204:1: W293 Blank line contains whitespace
tardis/io/logger/logger.py:215:1: W293 Blank line contains whitespace
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tardis/io/logger/logger.py:247:1: W293 Blank line contains whitespace
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tardis/io/logger/logger.py:265:1: W293 [*] Blank line contains whitespace
tardis/io/logger/logger.py:280:1: W293 [*] Blank line contains whitespace
tardis/io/logger/logger.py:283:5: RET505 [*] Unnecessary `else` after `return` statement
tardis/io/logger/logger_widget.py:1:1: I001 [*] Import block is un-sorted or un-formatted
tardis/io/logger/logger_widget.py:13:1: W293 Blank line contains whitespace
tardis/io/logger/logger_widget.py:21:1: W293 [*] Blank line contains whitespace
tardis/io/logger/logger_widget.py:41:1: W293 [*] Blank line contains whitespace
tardis/io/logger/logger_widget.py:46:5: D204 [*] 1 blank line required after class docstring
tardis/io/logger/logger_widget.py:47:1: W293 Blank line contains whitespace
tardis/io/logger/logger_widget.py:66:1: W293 [*] Blank line contains whitespace
tardis/io/logger/logger_widget.py:69:1: W293 [*] Blank line contains whitespace
tardis/io/logger/logger_widget.py:77:1: W293 Blank line contains whitespace
tardis/io/logger/logger_widget.py:101:1: W293 Blank line contains whitespace
tardis/io/logger/logger_widget.py:106:1: W293 Blank line contains whitespace
tardis/io/logger/logger_widget.py:117:1: W293 Blank line contains whitespace
tardis/io/logger/logger_widget.py:124:1: W293 Blank line contains whitespace
tardis/io/logger/logger_widget.py:139:1: W293 Blank line contains whitespace
tardis/io/logger/logger_widget.py:149:1: W293 [*] Blank line contains whitespace
tardis/io/logger/logger_widget.py:152:1: W293 [*] Blank line contains whitespace
tardis/io/logger/logger_widget.py:157:1: W293 [*] Blank line contains whitespace
tardis/io/logger/logger_widget.py:159:1: W293 [*] Blank line contains whitespace
tardis/io/logger/logger_widget.py:164:1: W293 [*] Blank line contains whitespace
tardis/io/logger/logger_widget.py:168:1: W293 [*] Blank line contains whitespace
tardis/io/logger/logger_widget.py:171:1: W293 [*] Blank line contains whitespace
tardis/io/logger/logger_widget.py:178:1: W293 [*] Blank line contains whitespace
tardis/io/logger/logger_widget.py:180:115: W291 [*] Trailing whitespace
tardis/io/logger/logger_widget.py:183:1: W293 [*] Blank line contains whitespace
tardis/io/logger/logger_widget.py:186:1: W293 [*] Blank line contains whitespace
tardis/io/logger/logger_widget.py:189:1: W293 Blank line contains whitespace
tardis/io/logger/logger_widget.py:202:1: W293 [*] Blank line contains whitespace
tardis/io/logger/logger_widget.py:208:1: W293 [*] Blank line contains whitespace
tardis/io/logger/logger_widget.py:216:1: W293 [*] Blank line contains whitespace
tardis/io/logger/montecarlo_tracking.py:62:30: G004 Logging statement uses f-string
tardis/io/logger/montecarlo_tracking.py:63:30: G004 Logging statement uses f-string
tardis/io/model/__init__.py:2:44: F401 `tardis.io.model.readers.cmfgen.read_cmfgen_model` imported but unused; consider removing, adding to `__all__`, or using a redundant alias
tardis/io/model/__init__.py:3:44: F401 `tardis.io.model.readers.stella.read_stella_model` imported but unused; consider removing, adding to `__all__`, or using a redundant alias
tardis/io/model/parse_atom_data.py:40:21: G004 Logging statement uses f-string
tardis/io/model/parse_density_configuration.py:2:1: UP035 `typing.Tuple` is deprecated, use `tuple` instead
tardis/io/model/parse_density_configuration.py:20:6: UP006 [*] Use `tuple` instead of `Tuple` for type annotation
tardis/io/model/parse_mass_fraction_configuration.py:4:25: F401 [*] `astropy.units` imported but unused
tardis/io/model/parse_packet_source_configuration.py:1:1: I001 [*] Import block is un-sorted or un-formatted
tardis/io/model/parse_radiation_field_configuration.py:1:1: I001 [*] Import block is un-sorted or un-formatted
tardis/io/model/readers/arepo.py:1:1: I001 [*] Import block is un-sorted or un-formatted
tardis/io/model/readers/artis.py:91:15: C420 [*] Unnecessary dict comprehension for iterable; use `dict.fromkeys` instead
tardis/io/model/readers/artis.py:121:5: RET505 [*] Unnecessary `else` after `return` statement
tardis/io/model/readers/generic_readers.py:1:1: UP035 `typing.Tuple` is deprecated, use `tuple` instead
tardis/io/model/readers/generic_readers.py:20:6: UP006 [*] Use `tuple` instead of `Tuple` for type annotation
tardis/io/model/readers/generic_readers.py:51:72: W291 [*] Trailing whitespace
tardis/io/model/readers/snec/__init__.py:1:53: F401 `tardis.io.model.readers.snec.snec_input.read_snec_isotope_profile` imported but unused; consider removing, adding to `__all__`, or using a redundant alias
tardis/io/model/readers/snec/__init__.py:2:54: F401 `tardis.io.model.readers.snec.snec_output.read_snec_output` imported but unused; consider removing, adding to `__all__`, or using a redundant alias
tardis/io/model/readers/snec/snec_output.py:9:18: TC002 Move third-party import `xarray` into a type-checking block
tardis/io/model/readers/snec/tests/test_input_profiles.py:1:1: INP001 File `tardis/io/model/readers/snec/tests/test_input_profiles.py` is part of an implicit namespace package. Add an `__init__.py`.
tardis/io/model/readers/snec/tests/test_read_snec_output.py:1:1: INP001 File `tardis/io/model/readers/snec/tests/test_read_snec_output.py` is part of an implicit namespace package. Add an `__init__.py`.
tardis/io/model/readers/snec/tests/test_xg_files.py:1:1: INP001 File `tardis/io/model/readers/snec/tests/test_xg_files.py` is part of an implicit namespace package. Add an `__init__.py`.
tardis/io/model/readers/snec/tests/test_xg_files.py:1:1: I001 [*] Import block is un-sorted or un-formatted
tardis/io/model/readers/snec/tests/test_xg_files.py:4:21: F401 [*] `pathlib.Path` imported but unused
tardis/io/model/readers/snec/tests/test_xg_files.py:20:1: W293 [*] Blank line contains whitespace
tardis/io/model/readers/stella.py:52:17: RET508 [*] Unnecessary `else` after `break` statement
tardis/io/model/readers/tests/test_arepo_parser.py:1:1: INP001 File `tardis/io/model/readers/tests/test_arepo_parser.py` is part of an implicit namespace package. Add an `__init__.py`.
tardis/io/model/readers/tests/test_artis_readers.py:1:1: INP001 File `tardis/io/model/readers/tests/test_artis_readers.py` is part of an implicit namespace package. Add an `__init__.py`.
tardis/io/model/readers/tests/test_artis_readers.py:43:5: PT009 Use a regular `assert` instead of unittest-style `assert_`
tardis/io/model/readers/tests/test_artis_readers.py:61:5: F631 Assert test is a non-empty tuple, which is always `True`
tardis/io/model/readers/tests/test_ascii_readers.py:1:1: INP001 File `tardis/io/model/readers/tests/test_ascii_readers.py` is part of an implicit namespace package. Add an `__init__.py`.
tardis/io/model/readers/tests/test_cmfgen_reader.py:1:1: INP001 File `tardis/io/model/readers/tests/test_cmfgen_reader.py` is part of an implicit namespace package. Add an `__init__.py`.
tardis/io/model/readers/tests/test_cmfgen_reader.py:4:1: PT013 Incorrect import of `pytest`; use `import pytest` instead
tardis/io/model/readers/tests/test_csvy_reader.py:1:1: INP001 File `tardis/io/model/readers/tests/test_csvy_reader.py` is part of an implicit namespace package. Add an `__init__.py`.
tardis/io/model/readers/tests/test_csvy_reader.py:47:10: B017 Do not assert blind exception: `Exception`
tardis/io/model/readers/tests/test_stella_reader.py:1:1: INP001 File `tardis/io/model/readers/tests/test_stella_reader.py` is part of an implicit namespace package. Add an `__init__.py`.
tardis/io/model/readers/tests/test_stella_reader.py:5:1: PT013 Incorrect import of `pytest`; use `import pytest` instead
tardis/io/tests/test_HDFWriter.py:1:1: N999 Invalid module name: 'test_HDFWriter'
tardis/io/tests/test_HDFWriter.py:1:1: I001 [*] Import block is un-sorted or un-formatted
tardis/io/tests/test_HDFWriter.py:170:1: W293 [*] Blank line contains whitespace
tardis/io/tests/test_model_reader.py:6:43: F401 [*] `tardis.io.model.readers.artis.read_artis_density` imported but unused
tardis/io/util.py:17:20: N812 Lowercase `__path__` imported as non-lowercase `TARDIS_PATH`
tardis/io/util.py:273:11: UP033 [*] Use `@functools.cache` instead of `@functools.lru_cache(maxsize=None)`
tardis/model/__init__.py:9:31: F401 `tardis.model.base.SimulationState` imported but unused; consider removing, adding to `__all__`, or using a redundant alias
tardis/model/base.py:1:1: I001 [*] Import block is un-sorted or un-formatted
tardis/model/base.py:368:21: G004 Logging statement uses f-string
tardis/model/geometry/tests/test_radial1d.py:1:1: INP001 File `tardis/model/geometry/tests/test_radial1d.py` is part of an implicit namespace package. Add an `__init__.py`.
tardis/model/matter/__init__.py:1:45: F401 `tardis.model.matter.composition.Composition` imported but unused; consider removing, adding to `__all__`, or using a redundant alias
tardis/model/matter/composition.py:1:1: I001 [*] Import block is un-sorted or un-formatted
tardis/model/matter/composition.py:178:9: RET505 [*] Unnecessary `else` after `return` statement
tardis/model/matter/decay.py:1:1: I001 [*] Import block is un-sorted or un-formatted
tardis/model/matter/decay.py:103:21: G004 Logging statement uses f-string
tardis/opacities/macro_atom/base.py:112:5: E722 Do not use bare `except`
tardis/opacities/macro_atom/base.py:131:14: UP008 Use `super()` instead of `super(__class__, self)`
tardis/opacities/macro_atom/base.py:229:9: E722 Do not use bare `except`
tardis/opacities/macro_atom/macroatom_transitions.py:1:1: I001 [*] Import block is un-sorted or un-formatted
tardis/opacities/macro_atom/transition_probabilities.py:1:1: I001 [*] Import block is un-sorted or un-formatted
tardis/opacities/macro_atom/transition_probabilities.py:16:11: RUF022 [*] `__all__` is not sorted
tardis/opacities/macro_atom/util.py:4:33: F401 [*] `tardis.constants` imported but unused
tardis/opacities/opacity_state.py:111:9: ANN204 Missing return type annotation for special method `__getitem__`
tardis/opacities/opacity_state.py:117:9: D407 [*] Missing dashed underline after section ("Returns")
tardis/opacities/opacity_state.py:117:9: D406 [*] Section name should end with a newline ("Returns")
tardis/opacities/opacity_state.py:247:9: D202 [*] No blank lines allowed after function docstring (found 1)
tardis/opacities/tests/conftest.py:1:1: I001 [*] Import block is un-sorted or un-formatted
tardis/opacities/tests/test_opacity_solver.py:1:1: I001 [*] Import block is un-sorted or un-formatted
tardis/opacities/tests/test_opacity_solver.py:2:17: F401 [*] `numpy` imported but unused
tardis/opacities/tests/test_opacity_solver.py:10:44: F401 [*] `tardis.opacities.opacity_state.OpacityState` imported but unused
tardis/opacities/tests/test_opacity_solver.py:11:42: F401 [*] `tardis.opacities.tau_sobolev.calculate_sobolev_line_opacity` imported but unused
tardis/opacities/tests/test_opacity_state_numba.py:1:1: I001 [*] Import block is un-sorted or un-formatted
tardis/opacities/tests/test_opacity_state_numba.py:2:44: F401 [*] `tardis.opacities.opacity_state.OpacityState` imported but unused
tardis/plasma/__init__.py:5:32: F401 `tardis.plasma.base.BasePlasma` imported but unused; consider removing, adding to `__all__`, or using a redundant alias
tardis/plasma/assembly/__init__.py:1:41: F401 `tardis.plasma.assembly.base.PlasmaSolverFactory` imported but unused; consider removing, adding to `__all__`, or using a redundant alias
tardis/plasma/base.py:11:1: F403 `from tardis.plasma.properties.base import *` used; unable to detect undefined names
tardis/plasma/base.py:45:9: RET505 [*] Unnecessary `else` after `return` statement
tardis/plasma/base.py:53:9: RET506 [*] Unnecessary `else` after `raise` statement
tardis/plasma/base.py:111:17: E722 Do not use bare `except`
tardis/plasma/base.py:144:44: F405 `PreviousIterationProperty` may be undefined, or defined from star imports
tardis/plasma/base.py:153:46: F405 `Input` may be undefined, or defined from star imports
tardis/plasma/base.py:184:9: PLC0206 Extracting value from dictionary without calling `.items()`
tardis/plasma/base.py:273:13: G004 Logging statement uses f-string
tardis/plasma/base.py:296:20: F401 [*] `pygraphviz` imported but unused
tardis/plasma/base.py:297:9: E722 Do not use bare `except`
tardis/plasma/base.py:383:9: E722 Do not use bare `except`
tardis/plasma/base.py:429:35: F405 `HiddenPlasmaProperty` may be undefined, or defined from star imports
tardis/plasma/base.py:447:29: E722 Do not use bare `except`
tardis/plasma/electron_energy_distribution/__init__.py:2:5: F401 `tardis.plasma.electron_energy_distribution.base.ElectronEnergyDistribution` imported but unused; consider removing, adding to `__all__`, or using a redundant alias
tardis/plasma/electron_energy_distribution/__init__.py:3:5: F401 `tardis.plasma.electron_energy_distribution.base.ThermalElectronEnergyDistribution` imported but unused; consider removing, adding to `__all__`, or using a redundant alias
tardis/plasma/equilibrium/rates/__init__.py:1:1: I001 [*] Import block is un-sorted or un-formatted
tardis/plasma/equilibrium/rates/__init__.py:2:5: F401 `tardis.plasma.equilibrium.rates.collision_strengths.UpsilonCMFGENSolver` imported but unused; consider removing, adding to `__all__`, or using a redundant alias
tardis/plasma/equilibrium/rates/__init__.py:3:5: F401 `tardis.plasma.equilibrium.rates.collision_strengths.UpsilonRegemorterSolver` imported but unused; consider removing, adding to `__all__`, or using a redundant alias
tardis/plasma/equilibrium/rates/__init__.py:6:5: F401 `tardis.plasma.equilibrium.rates.collisional_ionization_rates.CollisionalIonizationRateSolver` imported but unused; consider removing, adding to `__all__`, or using a redundant alias
tardis/plasma/equilibrium/rates/__init__.py:9:5: F401 `tardis.plasma.equilibrium.rates.collisional_ionization_strengths.CollisionalIonizationSeaton` imported but unused; consider removing, adding to `__all__`, or using a redundant alias
tardis/plasma/equilibrium/rates/__init__.py:12:5: F401 `tardis.plasma.equilibrium.rates.collisional_rates.ThermalCollisionalRateSolver` imported but unused; consider removing, adding to `__all__`, or using a redundant alias
tardis/plasma/equilibrium/rates/__init__.py:15:5: F401 `tardis.plasma.equilibrium.rates.photoionization_rates.AnalyticPhotoionizationRateSolver` imported but unused; consider removing, adding to `__all__`, or using a redundant alias
tardis/plasma/equilibrium/rates/__init__.py:16:5: F401 `tardis.plasma.equilibrium.rates.photoionization_rates.EstimatedPhotoionizationRateSolver` imported but unused; consider removing, adding to `__all__`, or using a redundant alias
tardis/plasma/equilibrium/rates/__init__.py:19:5: F401 `tardis.plasma.equilibrium.rates.photoionization_strengths.AnalyticPhotoionizationCoeffSolver` imported but unused; consider removing, adding to `__all__`, or using a redundant alias
tardis/plasma/equilibrium/rates/__init__.py:20:5: F401 `tardis.plasma.equilibrium.rates.photoionization_strengths.EstimatedPhotoionizationCoeffSolver` imported but unused; consider removing, adding to `__all__`, or using a redundant alias
tardis/plasma/equilibrium/rates/__init__.py:21:5: F401 `tardis.plasma.equilibrium.rates.photoionization_strengths.SpontaneousRecombinationCoeffSolver` imported but unused; consider removing, adding to `__all__`, or using a redundant alias
tardis/plasma/equilibrium/rates/__init__.py:22:5: F401 `tardis.plasma.equilibrium.rates.photoionization_strengths.AnalyticCorrectedPhotoionizationCoeffSolver` imported but unused; consider removing, adding to `__all__`, or using a redundant alias
tardis/plasma/equilibrium/rates/__init__.py:25:5: F401 `tardis.plasma.equilibrium.rates.radiative_rates.RadiativeRatesSolver` imported but unused; consider removing, adding to `__all__`, or using a redundant alias
tardis/plasma/equilibrium/rates/collision_strengths.py:1:1: I001 [*] Import block is un-sorted or un-formatted
tardis/plasma/equilibrium/rates/collisional_rates.py:1:1: I001 [*] Import block is un-sorted or un-formatted
tardis/plasma/equilibrium/rates/radiative_rates.py:1:1: I001 [*] Import block is un-sorted or un-formatted
tardis/plasma/equilibrium/tests/test_ion_populations.py:5:8: F401 [*] `pytest` imported but unused
tardis/plasma/equilibrium/tests/test_level_populations.py:3:18: F401 [*] `pandas` imported but unused
tardis/plasma/properties/__init__.py:8:1: F403 `from tardis.opacities.macro_atom.transition_probabilities import *` used; unable to detect undefined names
tardis/plasma/properties/__init__.py:9:1: F403 `from tardis.plasma.properties.atomic import *` used; unable to detect undefined names
tardis/plasma/properties/__init__.py:10:1: F403 `from tardis.plasma.properties.continuum_processes import *` used; unable to detect undefined names
tardis/plasma/properties/__init__.py:11:1: F403 `from tardis.plasma.properties.general import *` used; unable to detect undefined names
tardis/plasma/properties/__init__.py:12:1: F403 `from tardis.plasma.properties.helium_nlte import *` used; unable to detect undefined names
tardis/plasma/properties/__init__.py:13:1: F403 `from tardis.plasma.properties.ion_population import *` used; unable to detect undefined names
tardis/plasma/properties/__init__.py:14:1: F403 `from tardis.plasma.properties.level_population import *` used; unable to detect undefined names
tardis/plasma/properties/__init__.py:15:1: F403 `from tardis.plasma.properties.nlte import *` used; unable to detect undefined names
tardis/plasma/properties/__init__.py:16:1: F403 `from tardis.plasma.properties.nlte_rate_equation_solver import *` used; unable to detect undefined names
tardis/plasma/properties/__init__.py:17:1: F403 `from tardis.plasma.properties.partition_function import *` used; unable to detect undefined names
tardis/plasma/properties/__init__.py:18:1: F403 `from tardis.plasma.properties.plasma_input import *` used; unable to detect undefined names
tardis/plasma/properties/__init__.py:19:1: F403 `from tardis.plasma.properties.radiative_properties import *` used; unable to detect undefined names
tardis/plasma/properties/__init__.py:20:1: F403 `from tardis.plasma.properties.rate_matrix_index import *` used; unable to detect undefined names
tardis/plasma/properties/atomic.py:1:1: I001 [*] Import block is un-sorted or un-formatted
tardis/plasma/properties/atomic.py:28:11: RUF022 [*] `__all__` is not sorted
tardis/plasma/properties/atomic.py:555:9: RET505 [*] Unnecessary `else` after `return` statement
tardis/plasma/properties/atomic.py:586:9: RET505 [*] Unnecessary `else` after `return` statement
tardis/plasma/properties/atomic.py:599:17: G004 Logging statement uses f-string
tardis/plasma/properties/atomic.py:640:9: RET505 [*] Unnecessary `else` after `return` statement
tardis/plasma/properties/base.py:7:11: RUF022 [*] `__all__` is not sorted
tardis/plasma/properties/base.py:117:25: G004 Logging statement uses f-string
tardis/plasma/properties/base.py:178:9: RET505 [*] Unnecessary `else` after `return` statement
tardis/plasma/properties/continuum_processes/__init__.py:2:5: F401 `tardis.plasma.properties.continuum_processes.photo_ion_rate_coeff.PhotoIonRateCoeff` imported but unused; consider removing, adding to `__all__`, or using a redundant alias
tardis/plasma/properties/continuum_processes/__init__.py:4:1: F403 `from tardis.plasma.properties.continuum_processes.rates import *` used; unable to detect undefined names
tardis/plasma/properties/continuum_processes/__init__.py:6:5: F401 `tardis.plasma.properties.continuum_processes.recomb_rate_coeff.SpontRecombRateCoeff` imported but unused; consider removing, adding to `__all__`, or using a redundant alias
tardis/plasma/properties/continuum_processes/__init__.py:7:5: F401 `tardis.plasma.properties.continuum_processes.recomb_rate_coeff.StimRecombRateCoeff` imported but unused; consider removing, adding to `__all__`, or using a redundant alias
tardis/plasma/properties/continuum_processes/__init__.py:8:5: F401 `tardis.plasma.properties.continuum_processes.recomb_rate_coeff.StimRecombRateFactor` imported but unused; consider removing, adding to `__all__`, or using a redundant alias
tardis/plasma/properties/continuum_processes/rates.py:1:1: I001 [*] Import block is un-sorted or un-formatted
tardis/plasma/properties/continuum_processes/rates.py:23:11: RUF022 [*] `__all__` is not sorted
tardis/plasma/properties/continuum_processes/rates.py:157:13: FURB187 Use of assignment of `reversed` on list `idx_arrays`
tardis/plasma/properties/general.py:10:11: RUF022 [*] `__all__` is not sorted
tardis/plasma/properties/helium_nlte.py:182:21: E722 Do not use bare `except`
tardis/plasma/properties/helium_nlte.py:185:29: G004 Logging statement uses f-string
tardis/plasma/properties/helium_nlte.py:218:13: S605 Starting a process with a shell: seems safe, but may be changed in the future; consider rewriting without `shell`
tardis/plasma/properties/helium_nlte.py:259:69: F821 Undefined name `s1`
tardis/plasma/properties/hydrogen_continuum.py:131:13: F821 Undefined name `elemental_number_density`
tardis/plasma/properties/hydrogen_continuum.py:136:13: F821 Undefined name `partition_function`
tardis/plasma/properties/hydrogen_continuum.py:137:13: F821 Undefined name `boltzmann_factor`
tardis/plasma/properties/ion_population.py:19:11: RUF022 [*] `__all__` is not sorted
tardis/plasma/properties/ion_population.py:370:25: G004 Logging statement uses f-string
tardis/plasma/properties/ion_population.py:495:25: G004 Logging statement uses f-string
tardis/plasma/properties/legacy_property_collections.py:10:1: F403 `from tardis.plasma.properties import *` used; unable to detect undefined names
tardis/plasma/properties/legacy_property_collections.py:19:9: F405 `DilutePlanckianRadField` may be undefined, or defined from star imports
tardis/plasma/properties/legacy_property_collections.py:20:9: F405 `NumberDensity` may be undefined, or defined from star imports
tardis/plasma/properties/legacy_property_collections.py:21:9: F405 `TimeExplosion` may be undefined, or defined from star imports
tardis/plasma/properties/legacy_property_collections.py:22:9: F405 `AtomicData` may be undefined, or defined from star imports
tardis/plasma/properties/legacy_property_collections.py:23:9: F405 `JBlues` may be undefined, or defined from star imports
tardis/plasma/properties/legacy_property_collections.py:24:9: F405 `LinkTRadTElectron` may be undefined, or defined from star imports
tardis/plasma/properties/legacy_property_collections.py:25:9: F405 `HeliumTreatment` may be undefined, or defined from star imports
tardis/plasma/properties/legacy_property_collections.py:26:9: F405 `ContinuumInteractionSpecies` may be undefined, or defined from star imports
tardis/plasma/properties/legacy_property_collections.py:27:9: F405 `NLTEIonizationSpecies` may be undefined, or defined from star imports
tardis/plasma/properties/legacy_property_collections.py:28:9: F405 `NLTEExcitationSpecies` may be undefined, or defined from star imports
tardis/plasma/properties/legacy_property_collections.py:33:9: F405 `TRadiative` may be undefined, or defined from star imports
tardis/plasma/properties/legacy_property_collections.py:34:9: F405 `DilutionFactor` may be undefined, or defined from star imports
tardis/plasma/properties/legacy_property_collections.py:35:9: F405 `BetaRadiation` may be undefined, or defined from star imports
tardis/plasma/properties/legacy_property_collections.py:36:9: F405 `Levels` may be undefined, or defined from star imports
tardis/plasma/properties/legacy_property_collections.py:37:9: F405 `Lines` may be undefined, or defined from star imports
tardis/plasma/properties/legacy_property_collections.py:38:9: F405 `PartitionFunction` may be undefined, or defined from star imports
tardis/plasma/properties/legacy_property_collections.py:39:9: F405 `GElectron` may be undefined, or defined from star imports
tardis/plasma/properties/legacy_property_collections.py:40:9: F405 `IonizationData` may be undefined, or defined from star imports
tardis/plasma/properties/legacy_property_collections.py:41:9: F405 `LinesLowerLevelIndex` may be undefined, or defined from star imports
tardis/plasma/properties/legacy_property_collections.py:42:9: F405 `LinesUpperLevelIndex` may be undefined, or defined from star imports
tardis/plasma/properties/legacy_property_collections.py:44:9: F405 `StimulatedEmissionFactor` may be undefined, or defined from star imports
tardis/plasma/properties/legacy_property_collections.py:45:9: F405 `SelectedAtoms` may be undefined, or defined from star imports
tardis/plasma/properties/legacy_property_collections.py:46:9: F405 `ElectronTemperature` may be undefined, or defined from star imports
tardis/plasma/properties/legacy_property_collections.py:49:55: F405 `PhiSahaLTE` may be undefined, or defined from star imports
tardis/plasma/properties/legacy_property_collections.py:50:55: F405 `LevelBoltzmannFactorLTE` may be undefined, or defined from star imports
tardis/plasma/properties/legacy_property_collections.py:52:44: F405 `MacroAtomData` may be undefined, or defined from star imports
tardis/plasma/properties/legacy_property_collections.py:55:6: F405 `PhiSahaNebular` may be undefined, or defined from star imports
tardis/plasma/properties/legacy_property_collections.py:55:22: F405 `ZetaData` may be undefined, or defined from star imports
tardis/plasma/properties/legacy_property_collections.py:55:32: F405 `BetaElectron` may be undefined, or defined from star imports
tardis/plasma/properties/legacy_property_collections.py:55:46: F405 `RadiationFieldCorrection` may be undefined, or defined from star imports
tardis/plasma/properties/legacy_property_collections.py:58:6: F405 `LevelBoltzmannFactorDiluteLTE` may be undefined, or defined from star imports
tardis/plasma/properties/legacy_property_collections.py:60:49: F405 `LevelBoltzmannFactorNoNLTE` may be undefined, or defined from star imports
tardis/plasma/properties/legacy_property_collections.py:63:9: F405 `LevelBoltzmannFactorNLTE` may be undefined, or defined from star imports
tardis/plasma/properties/legacy_property_collections.py:64:9: F405 `NLTEData` may be undefined, or defined from star imports
tardis/plasma/properties/legacy_property_collections.py:65:9: F405 `PreviousElectronDensities` may be undefined, or defined from star imports
tardis/plasma/properties/legacy_property_collections.py:66:9: F405 `PreviousBetaSobolev` may be undefined, or defined from star imports
tardis/plasma/properties/legacy_property_collections.py:71:6: F405 `NLTEIndexHelper` may be undefined, or defined from star imports
tardis/plasma/properties/legacy_property_collections.py:71:23: F405 `NLTEPopulationSolverRoot` may be undefined, or defined from star imports
tardis/plasma/properties/legacy_property_collections.py:74:6: F405 `NLTEIndexHelper` may be undefined, or defined from star imports
tardis/plasma/properties/legacy_property_collections.py:74:23: F405 `NLTEPopulationSolverLU` may be undefined, or defined from star imports
tardis/plasma/properties/legacy_property_collections.py:78:9: F405 `HeliumNLTE` may be undefined, or defined from star imports
tardis/plasma/properties/legacy_property_collections.py:79:9: F405 `RadiationFieldCorrection` may be undefined, or defined from star imports
tardis/plasma/properties/legacy_property_collections.py:80:9: F405 `ZetaData` may be undefined, or defined from star imports
tardis/plasma/properties/legacy_property_collections.py:81:9: F405 `BetaElectron` may be undefined, or defined from star imports
tardis/plasma/properties/legacy_property_collections.py:82:9: F405 `LevelNumberDensityHeNLTE` may be undefined, or defined from star imports
tardis/plasma/properties/legacy_property_collections.py:83:9: F405 `IonNumberDensityHeNLTE` may be undefined, or defined from star imports
tardis/plasma/properties/legacy_property_collections.py:87:6: F405 `LevelNumberDensity` may be undefined, or defined from star imports
tardis/plasma/properties/legacy_property_collections.py:87:26: F405 `IonNumberDensity` may be undefined, or defined from star imports
tardis/plasma/properties/legacy_property_collections.py:90:6: F405 `HeliumNumericalNLTE` may be undefined, or defined from star imports
tardis/plasma/properties/legacy_property_collections.py:94:9: F405 `PhotoIonRateCoeff` may be undefined, or defined from star imports
tardis/plasma/properties/legacy_property_collections.py:95:9: F405 `StimRecombRateFactor` may be undefined, or defined from star imports
tardis/plasma/properties/legacy_property_collections.py:96:9: F405 `BfHeatingRateCoeffEstimator` may be undefined, or defined from star imports
tardis/plasma/properties/legacy_property_collections.py:97:9: F405 `StimRecombCoolingRateCoeffEstimator` may be undefined, or defined from star imports
tardis/plasma/properties/legacy_property_collections.py:98:9: F405 `YgData` may be undefined, or defined from star imports
tardis/plasma/properties/legacy_property_collections.py:103:9: F405 `StimRecombRateCoeff` may be undefined, or defined from star imports
tardis/plasma/properties/legacy_property_collections.py:104:9: F405 `PhotoIonizationData` may be undefined, or defined from star imports
tardis/plasma/properties/legacy_property_collections.py:105:9: F405 `SpontRecombRateCoeff` may be undefined, or defined from star imports
tardis/plasma/properties/legacy_property_collections.py:106:9: F405 `ThermalLevelBoltzmannFactorLTE` may be undefined, or defined from star imports
tardis/plasma/properties/legacy_property_collections.py:107:9: F405 `ThermalLTEPartitionFunction` may be undefined, or defined from star imports
tardis/plasma/properties/legacy_property_collections.py:108:9: F405 `BetaElectron` may be undefined, or defined from star imports
tardis/plasma/properties/legacy_property_collections.py:109:9: F405 `ThermalGElectron` may be undefined, or defined from star imports
tardis/plasma/properties/legacy_property_collections.py:110:9: F405 `ThermalPhiSahaLTE` may be undefined, or defined from star imports
tardis/plasma/properties/legacy_property_collections.py:111:9: F405 `SahaFactor` may be undefined, or defined from star imports
tardis/plasma/properties/legacy_property_collections.py:112:9: F405 `CorrPhotoIonRateCoeff` may be undefined, or defined from star imports
tardis/plasma/properties/legacy_property_collections.py:113:9: F405 `SpontRecombCoolingRateCoeff` may be undefined, or defined from star imports
tardis/plasma/properties/legacy_property_collections.py:114:9: F405 `RawRecombTransProbs` may be undefined, or defined from star imports
tardis/plasma/properties/legacy_property_collections.py:115:9: F405 `RawPhotoIonTransProbs` may be undefined, or defined from star imports
tardis/plasma/properties/legacy_property_collections.py:116:9: F405 `RawRadBoundBoundTransProbs` may be undefined, or defined from star imports
tardis/plasma/properties/legacy_property_collections.py:117:9: F405 `MarkovChainTransProbs` may be undefined, or defined from star imports
tardis/plasma/properties/legacy_property_collections.py:118:9: F405 `NonContinuumTransProbsMask` may be undefined, or defined from star imports
tardis/plasma/properties/legacy_property_collections.py:119:9: F405 `YgInterpolator` may be undefined, or defined from star imports
tardis/plasma/properties/legacy_property_collections.py:120:9: F405 `CollExcRateCoeff` may be undefined, or defined from star imports
tardis/plasma/properties/legacy_property_collections.py:121:9: F405 `CollDeexcRateCoeff` may be undefined, or defined from star imports
tardis/plasma/properties/legacy_property_collections.py:122:9: F405 `RawCollisionTransProbs` may be undefined, or defined from star imports
tardis/plasma/properties/legacy_property_collections.py:123:9: F405 `MarkovChainIndex` may be undefined, or defined from star imports
tardis/plasma/properties/legacy_property_collections.py:124:9: F405 `MarkovChainTransProbsCollector` may be undefined, or defined from star imports
tardis/plasma/properties/legacy_property_collections.py:126:9: F405 `MonteCarloTransProbs` may be undefined, or defined from star imports
tardis/plasma/properties/legacy_property_collections.py:127:9: F405 `FreeFreeCoolingRate` may be undefined, or defined from star imports
tardis/plasma/properties/legacy_property_collections.py:128:9: F405 `FreeBoundCoolingRate` may be undefined, or defined from star imports
tardis/plasma/properties/legacy_property_collections.py:130:9: F405 `LevelNumberDensityLTE` may be undefined, or defined from star imports
tardis/plasma/properties/legacy_property_collections.py:131:9: F405 `PhotoIonBoltzmannFactor` may be undefined, or defined from star imports
tardis/plasma/properties/legacy_property_collections.py:132:9: F405 `FreeBoundEmissionCDF` may be undefined, or defined from star imports
tardis/plasma/properties/legacy_property_collections.py:133:9: F405 `LevelIdxs2LineIdx` may be undefined, or defined from star imports
tardis/plasma/properties/legacy_property_collections.py:134:9: F405 `LevelIdxs2TransitionIdx` may be undefined, or defined from star imports
tardis/plasma/properties/legacy_property_collections.py:135:9: F405 `CollIonRateCoeffSeaton` may be undefined, or defined from star imports
tardis/plasma/properties/legacy_property_collections.py:136:9: F405 `CollRecombRateCoeff` may be undefined, or defined from star imports
tardis/plasma/properties/legacy_property_collections.py:138:9: F405 `ContinuumInteractionHandler` may be undefined, or defined from star imports
tardis/plasma/properties/legacy_property_collections.py:142:58: F405 `AdiabaticCoolingRate` may be undefined, or defined from star imports
tardis/plasma/properties/legacy_property_collections.py:145:9: F405 `RawTwoPhotonTransProbs` may be undefined, or defined from star imports
tardis/plasma/properties/legacy_property_collections.py:146:9: F405 `TwoPhotonData` may be undefined, or defined from star imports
tardis/plasma/properties/legacy_property_collections.py:147:9: F405 `TwoPhotonEmissionCDF` may be undefined, or defined from star imports
tardis/plasma/properties/legacy_property_collections.py:148:9: F405 `TwoPhotonFrequencySampler` may be undefined, or defined from star imports
tardis/plasma/properties/nlte.py:9:11: RUF022 [*] `__all__` is not sorted
tardis/plasma/properties/nlte_rate_equation_solver.py:9:11: RUF022 [*] `__all__` is not sorted
tardis/plasma/properties/nlte_rate_equation_solver.py:316:25: G004 Logging statement uses f-string
tardis/plasma/properties/nlte_rate_equation_solver.py:323:25: G004 Logging statement uses f-string
tardis/plasma/properties/partition_function.py:21:11: RUF022 [*] `__all__` is not sorted
tardis/plasma/properties/partition_function.py:154:9: RET505 [*] Unnecessary `elif` after `return` statement
tardis/plasma/properties/partition_function.py:190:25: G004 Logging statement uses f-string
tardis/plasma/properties/plasma_input.py:6:11: RUF022 [*] `__all__` is not sorted
tardis/plasma/properties/property_collections.py:1:1: F403 `from tardis.plasma.properties import *` used; unable to detect undefined names
tardis/plasma/properties/property_collections.py:10:9: F405 `DilutePlanckianRadField` may be undefined, or defined from star imports
tardis/plasma/properties/property_collections.py:11:9: F405 `NumberDensity` may be undefined, or defined from star imports
tardis/plasma/properties/property_collections.py:12:9: F405 `TimeExplosion` may be undefined, or defined from star imports
tardis/plasma/properties/property_collections.py:13:9: F405 `AtomicData` may be undefined, or defined from star imports
tardis/plasma/properties/property_collections.py:14:9: F405 `JBlues` may be undefined, or defined from star imports
tardis/plasma/properties/property_collections.py:15:9: F405 `LinkTRadTElectron` may be undefined, or defined from star imports
tardis/plasma/properties/property_collections.py:16:9: F405 `HeliumTreatment` may be undefined, or defined from star imports
tardis/plasma/properties/property_collections.py:17:9: F405 `ContinuumInteractionSpecies` may be undefined, or defined from star imports
tardis/plasma/properties/property_collections.py:18:9: F405 `NLTEIonizationSpecies` may be undefined, or defined from star imports
tardis/plasma/properties/property_collections.py:19:9: F405 `NLTEExcitationSpecies` may be undefined, or defined from star imports
tardis/plasma/properties/property_collections.py:24:9: F405 `TRadiative` may be undefined, or defined from star imports
tardis/plasma/properties/property_collections.py:25:9: F405 `DilutionFactor` may be undefined, or defined from star imports
tardis/plasma/properties/property_collections.py:26:9: F405 `BetaRadiation` may be undefined, or defined from star imports
tardis/plasma/properties/property_collections.py:27:9: F405 `Levels` may be undefined, or defined from star imports
tardis/plasma/properties/property_collections.py:28:9: F405 `Lines` may be undefined, or defined from star imports
tardis/plasma/properties/property_collections.py:29:9: F405 `PartitionFunction` may be undefined, or defined from star imports
tardis/plasma/properties/property_collections.py:30:9: F405 `GElectron` may be undefined, or defined from star imports
tardis/plasma/properties/property_collections.py:31:9: F405 `IonizationData` may be undefined, or defined from star imports
tardis/plasma/properties/property_collections.py:32:9: F405 `LinesLowerLevelIndex` may be undefined, or defined from star imports
tardis/plasma/properties/property_collections.py:33:9: F405 `LinesUpperLevelIndex` may be undefined, or defined from star imports
tardis/plasma/properties/property_collections.py:34:9: F405 `StimulatedEmissionFactor` may be undefined, or defined from star imports
tardis/plasma/properties/property_collections.py:35:9: F405 `SelectedAtoms` may be undefined, or defined from star imports
tardis/plasma/properties/property_collections.py:36:9: F405 `ElectronTemperature` may be undefined, or defined from star imports
tardis/plasma/properties/property_collections.py:37:9: F405 `ThermalLevelBoltzmannFactorLTE` may be undefined, or defined from star imports
tardis/plasma/properties/property_collections.py:38:9: F405 `ThermalLTEPartitionFunction` may be undefined, or defined from star imports
tardis/plasma/properties/property_collections.py:39:9: F405 `BetaElectron` may be undefined, or defined from star imports
tardis/plasma/properties/property_collections.py:40:9: F405 `ThermalGElectron` may be undefined, or defined from star imports
tardis/plasma/properties/property_collections.py:41:9: F405 `ThermalPhiSahaLTE` may be undefined, or defined from star imports
tardis/plasma/properties/property_collections.py:42:9: F405 `SahaFactor` may be undefined, or defined from star imports
tardis/plasma/properties/property_collections.py:45:55: F405 `PhiSahaLTE` may be undefined, or defined from star imports
tardis/plasma/properties/property_collections.py:46:55: F405 `LevelBoltzmannFactorLTE` may be undefined, or defined from star imports
tardis/plasma/properties/property_collections.py:49:6: F405 `PhiSahaNebular` may be undefined, or defined from star imports
tardis/plasma/properties/property_collections.py:49:22: F405 `ZetaData` may be undefined, or defined from star imports
tardis/plasma/properties/property_collections.py:49:32: F405 `BetaElectron` may be undefined, or defined from star imports
tardis/plasma/properties/property_collections.py:49:46: F405 `RadiationFieldCorrection` may be undefined, or defined from star imports
tardis/plasma/properties/property_collections.py:52:6: F405 `LevelBoltzmannFactorDiluteLTE` may be undefined, or defined from star imports
tardis/plasma/properties/property_collections.py:54:49: F405 `LevelBoltzmannFactorNoNLTE` may be undefined, or defined from star imports
tardis/plasma/properties/property_collections.py:57:9: F405 `LevelBoltzmannFactorNLTE` may be undefined, or defined from star imports
tardis/plasma/properties/property_collections.py:58:9: F405 `NLTEData` may be undefined, or defined from star imports
tardis/plasma/properties/property_collections.py:59:9: F405 `PreviousElectronDensities` may be undefined, or defined from star imports
tardis/plasma/properties/property_collections.py:60:9: F405 `PreviousBetaSobolev` may be undefined, or defined from star imports
tardis/plasma/properties/property_collections.py:64:6: F405 `NLTEIndexHelper` may be undefined, or defined from star imports
tardis/plasma/properties/property_collections.py:64:23: F405 `NLTEPopulationSolverRoot` may be undefined, or defined from star imports
tardis/plasma/properties/property_collections.py:67:6: F405 `NLTEIndexHelper` may be undefined, or defined from star imports
tardis/plasma/properties/property_collections.py:67:23: F405 `NLTEPopulationSolverLU` may be undefined, or defined from star imports
tardis/plasma/properties/property_collections.py:71:9: F405 `HeliumNLTE` may be undefined, or defined from star imports
tardis/plasma/properties/property_collections.py:72:9: F405 `RadiationFieldCorrection` may be undefined, or defined from star imports
tardis/plasma/properties/property_collections.py:73:9: F405 `ZetaData` may be undefined, or defined from star imports
tardis/plasma/properties/property_collections.py:74:9: F405 `BetaElectron` may be undefined, or defined from star imports
tardis/plasma/properties/property_collections.py:75:9: F405 `LevelNumberDensityHeNLTE` may be undefined, or defined from star imports
tardis/plasma/properties/property_collections.py:76:9: F405 `IonNumberDensityHeNLTE` may be undefined, or defined from star imports
tardis/plasma/properties/property_collections.py:80:6: F405 `LevelNumberDensity` may be undefined, or defined from star imports
tardis/plasma/properties/property_collections.py:80:26: F405 `IonNumberDensity` may be undefined, or defined from star imports
tardis/plasma/properties/property_collections.py:83:6: F405 `HeliumNumericalNLTE` may be undefined, or defined from star imports
tardis/plasma/properties/property_collections.py:87:9: F405 `PhotoIonRateCoeff` may be undefined, or defined from star imports
tardis/plasma/properties/property_collections.py:88:9: F405 `StimRecombRateFactor` may be undefined, or defined from star imports
tardis/plasma/properties/property_collections.py:89:9: F405 `BfHeatingRateCoeffEstimator` may be undefined, or defined from star imports
tardis/plasma/properties/property_collections.py:90:9: F405 `StimRecombCoolingRateCoeffEstimator` may be undefined, or defined from star imports
tardis/plasma/properties/property_collections.py:91:9: F405 `YgData` may be undefined, or defined from star imports
tardis/plasma/properties/property_collections.py:96:9: F405 `StimRecombRateCoeff` may be undefined, or defined from star imports
tardis/plasma/properties/property_collections.py:97:9: F405 `PhotoIonizationData` may be undefined, or defined from star imports
tardis/plasma/properties/property_collections.py:98:9: F405 `SpontRecombRateCoeff` may be undefined, or defined from star imports
tardis/plasma/properties/property_collections.py:99:9: F405 `ThermalLevelBoltzmannFactorLTE` may be undefined, or defined from star imports
tardis/plasma/properties/property_collections.py:100:9: F405 `ThermalLTEPartitionFunction` may be undefined, or defined from star imports
tardis/plasma/properties/property_collections.py:101:9: F405 `BetaElectron` may be undefined, or defined from star imports
tardis/plasma/properties/property_collections.py:102:9: F405 `ThermalGElectron` may be undefined, or defined from star imports
tardis/plasma/properties/property_collections.py:103:9: F405 `ThermalPhiSahaLTE` may be undefined, or defined from star imports
tardis/plasma/properties/property_collections.py:104:9: F405 `SahaFactor` may be undefined, or defined from star imports
tardis/plasma/properties/property_collections.py:105:9: F405 `CorrPhotoIonRateCoeff` may be undefined, or defined from star imports
tardis/plasma/properties/property_collections.py:106:9: F405 `SpontRecombCoolingRateCoeff` may be undefined, or defined from star imports
tardis/plasma/properties/property_collections.py:107:9: F405 `YgInterpolator` may be undefined, or defined from star imports
tardis/plasma/properties/property_collections.py:108:9: F405 `CollExcRateCoeff` may be undefined, or defined from star imports
tardis/plasma/properties/property_collections.py:109:9: F405 `CollDeexcRateCoeff` may be undefined, or defined from star imports
tardis/plasma/properties/property_collections.py:110:9: F405 `RawCollisionTransProbs` may be undefined, or defined from star imports
tardis/plasma/properties/property_collections.py:111:9: F405 `MarkovChainIndex` may be undefined, or defined from star imports
tardis/plasma/properties/property_collections.py:112:9: F405 `FreeFreeCoolingRate` may be undefined, or defined from star imports
tardis/plasma/properties/property_collections.py:113:9: F405 `FreeBoundCoolingRate` may be undefined, or defined from star imports
tardis/plasma/properties/property_collections.py:114:9: F405 `LevelNumberDensityLTE` may be undefined, or defined from star imports
tardis/plasma/properties/property_collections.py:115:9: F405 `PhotoIonBoltzmannFactor` may be undefined, or defined from star imports
tardis/plasma/properties/property_collections.py:116:9: F405 `FreeBoundEmissionCDF` may be undefined, or defined from star imports
tardis/plasma/properties/property_collections.py:117:9: F405 `LevelIdxs2LineIdx` may be undefined, or defined from star imports
tardis/plasma/properties/property_collections.py:118:9: F405 `LevelIdxs2TransitionIdx` may be undefined, or defined from star imports
tardis/plasma/properties/property_collections.py:119:9: F405 `CollIonRateCoeffSeaton` may be undefined, or defined from star imports
tardis/plasma/properties/property_collections.py:120:9: F405 `CollRecombRateCoeff` may be undefined, or defined from star imports
tardis/plasma/properties/property_collections.py:121:9: F405 `ContinuumInteractionHandler` may be undefined, or defined from star imports
tardis/plasma/properties/property_collections.py:124:58: F405 `AdiabaticCoolingRate` may be undefined, or defined from star imports
tardis/plasma/properties/property_collections.py:127:9: F405 `RawTwoPhotonTransProbs` may be undefined, or defined from star imports
tardis/plasma/properties/property_collections.py:128:9: F405 `TwoPhotonData` may be undefined, or defined from star imports
tardis/plasma/properties/property_collections.py:129:9: F405 `TwoPhotonEmissionCDF` may be undefined, or defined from star imports
tardis/plasma/properties/property_collections.py:130:9: F405 `TwoPhotonFrequencySampler` may be undefined, or defined from star imports
tardis/plasma/properties/radiative_properties.py:16:11: RUF022 [*] `__all__` is not sorted
tardis/plasma/radiation_field/__init__.py:2:5: F401 `tardis.plasma.radiation_field.planck_rad_field.DilutePlanckianRadiationField` imported but unused; consider removing, adding to `__all__`, or using a redundant alias
tardis/plasma/radiation_field/__init__.py:3:5: F401 `tardis.plasma.radiation_field.planck_rad_field.PlanckianRadiationField` imported but unused; consider removing, adding to `__all__`, or using a redundant alias
tardis/plasma/radiation_field/planck_rad_field.py:58:44: UP007 [*] Use `X | Y` for type annotations
tardis/plasma/radiation_field/planck_rad_field.py:117:44: UP007 [*] Use `X | Y` for type annotations
tardis/plasma/standard_plasmas.py:323:9: RET506 [*] Unnecessary `else` after `raise` statement
tardis/plasma/tests/test_complete_plasmas.py:1:1: I001 [*] Import block is un-sorted or un-formatted
tardis/radiation_field/base.py:1:1: INP001 File `tardis/radiation_field/base.py` is part of an implicit namespace package. Add an `__init__.py`.
tardis/radiation_field/validate_radiation_field.py:1:1: INP001 File `tardis/radiation_field/validate_radiation_field.py` is part of an implicit namespace package. Add an `__init__.py`.
tardis/radiation_field/validate_radiation_field.py:1:1: I001 [*] Import block is un-sorted or un-formatted
tardis/radiation_field/validate_radiation_field.py:24:9: LOG015 `critical()` call on root logger
tardis/radiation_field/validate_radiation_field.py:25:13: G004 Logging statement uses f-string
tardis/scripts/cmfgen2tardis.py:13:27: F821 Undefined name `atomic_dataset`
tardis/scripts/cmfgen2tardis.py:68:34: F821 Undefined name `atomic_dataset`
tardis/scripts/debug/run_numba_single.py:1:1: INP001 File `tardis/scripts/debug/run_numba_single.py` is part of an implicit namespace package. Add an `__init__.py`.
tardis/simulation/__init__.py:5:36: F401 `tardis.simulation.base.Simulation` imported but unused; consider removing, adding to `__all__`, or using a redundant alias
tardis/simulation/base.py:1:1: I001 [*] Import block is un-sorted or un-formatted
tardis/simulation/base.py:18:5: F401 [*] `tardis.opacities.macro_atom.macroatom_solver.LegacyMacroAtomSolver` imported but unused
tardis/simulation/base.py:265:17: G004 Logging statement uses f-string
tardis/simulation/base.py:448:13: G004 Logging statement uses f-string
tardis/simulation/base.py:553:13: G004 Logging statement uses f-string
tardis/simulation/base.py:646:13: G004 Logging statement uses f-string
tardis/simulation/base.py:651:13: G004 Logging statement uses f-string
tardis/simulation/base.py:702:13: TRY300 Consider moving this statement to an `else` block
tardis/simulation/base.py:704:26: G004 Logging statement uses f-string
tardis/simulation/tests/test_simulation.py:1:1: I001 [*] Import block is un-sorted or un-formatted
tardis/simulation/tests/test_simulation.py:5:18: F401 [*] `copy.deepcopy` imported but unused
tardis/spectrum/formal_integral/base.py:1:1: I001 [*] Import block is un-sorted or un-formatted
tardis/spectrum/formal_integral/base.py:2:31: F401 [*] `scipy.interpolate.interp1d` imported but unused
tardis/spectrum/formal_integral/base.py:3:24: F401 [*] `scipy.sparse` imported but unused
tardis/spectrum/formal_integral/base.py:4:31: F401 [*] `scipy.sparse.linalg` imported but unused
tardis/spectrum/formal_integral/base.py:8:33: F401 [*] `tardis.constants` imported but unused
tardis/spectrum/formal_integral/base.py:54:9: RET506 [*] Unnecessary `else` after `raise` statement
tardis/spectrum/formal_integral/formal_integral_cuda.py:1:1: I001 [*] Import block is un-sorted or un-formatted
tardis/spectrum/formal_integral/formal_integral_cuda.py:89:5: RET505 [*] Unnecessary `else` after `return` statement
tardis/spectrum/formal_integral/formal_integral_cuda.py:132:5: RET505 [*] Unnecessary `else` after `return` statement
tardis/spectrum/formal_integral/formal_integral_numba.py:1:1: I001 [*] Import block is un-sorted or un-formatted
tardis/spectrum/formal_integral/formal_integral_numba.py:3:1: UP035 `typing.Tuple` is deprecated, use `tuple` instead
tardis/spectrum/formal_integral/formal_integral_numba.py:48:5: RET505 [*] Unnecessary `else` after `return` statement
tardis/spectrum/formal_integral/formal_integral_numba.py:96:5: RET505 [*] Unnecessary `else` after `return` statement
tardis/spectrum/formal_integral/formal_integral_numba.py:122:5: D202 [*] No blank lines allowed after function docstring (found 1)
tardis/spectrum/formal_integral/formal_integral_numba.py:151:5: D202 [*] No blank lines allowed after function docstring (found 1)
tardis/spectrum/formal_integral/formal_integral_numba.py:196:6: UP006 [*] Use `tuple` instead of `Tuple` for type annotation
tardis/spectrum/formal_integral/formal_integral_numba.py:204:5: D202 [*] No blank lines allowed after function docstring (found 1)
tardis/spectrum/formal_integral/formal_integral_numba.py:307:6: UP006 [*] Use `tuple` instead of `Tuple` for type annotation
tardis/spectrum/formal_integral/formal_integral_numba.py:386:6: UP006 [*] Use `tuple` instead of `Tuple` for type annotation
tardis/spectrum/formal_integral/formal_integral_numba.py:598:10: UP006 [*] Use `tuple` instead of `Tuple` for type annotation
tardis/spectrum/formal_integral/formal_integral_solver.py:1:1: I001 [*] Import block is un-sorted or un-formatted
tardis/spectrum/formal_integral/formal_integral_solver.py:101:17: F541 [*] f-string without any placeholders
tardis/spectrum/formal_integral/formal_integral_solver.py:101:17: G004 Logging statement uses f-string
tardis/spectrum/formal_integral/source_function.py:1:1: I001 [*] Import block is un-sorted or un-formatted
tardis/spectrum/formal_integral/tests/test_cuda_formal_integral.py:1:1: I001 [*] Import block is un-sorted or un-formatted
tardis/spectrum/formal_integral/tests/test_cuda_formal_integral.py:14:61: F401 [*] `tardis.spectrum.formal_integral.source_function.SourceFunctionSolver` imported but unused
tardis/spectrum/formal_integral/tests/test_formal_integral.py:1:1: I001 [*] Import block is un-sorted or un-formatted
tardis/spectrum/formal_integral/tests/test_formal_integral.py:10:55: F401 [*] `tardis.transport.montecarlo.configuration.montecarlo_globals` imported but unused
tardis/spectrum/formal_integral/tests/test_formal_integral.py:16:36: F401 [*] `tardis.spectrum.formal_integral.formal_integral_cuda.calculate_impact_parameters` imported but unused
tardis/spectrum/formal_integral/tests/test_formal_integral.py:17:5: F401 [*] `tardis.spectrum.formal_integral.formal_integral_cuda.intensity_black_body_cuda` imported but unused
tardis/spectrum/formal_integral/tests/test_numba_formal_integral.py:1:1: I001 [*] Import block is un-sorted or un-formatted
tardis/spectrum/tests/test_spectrum.py:1:21: F401 [*] `pathlib.Path` imported but unused
tardis/spectrum/tests/test_spectrum_solver.py:1:1: I001 [*] Import block is un-sorted or un-formatted
tardis/spectrum/tests/test_spectrum_solver.py:1:21: F401 [*] `pathlib.Path` imported but unused
tardis/spectrum/tests/test_spectrum_solver.py:9:51: F401 [*] `tardis.io.configuration.config_reader.Configuration` imported but unused
tardis/spectrum/tests/test_spectrum_solver.py:10:36: F401 [*] `tardis.simulation.base.Simulation` imported but unused
tardis/tests/test_tardis_full.py:1:1: I001 [*] Import block is un-sorted or un-formatted
tardis/tests/test_tardis_full_formal_integral.py:1:1: I001 [*] Import block is un-sorted or un-formatted
tardis/tests/test_tardis_full_formal_integral.py:3:17: F401 [*] `numpy` imported but unused
tardis/transport/frame_transformations.py:18:5: RET505 [*] Unnecessary `else` after `return` statement
tardis/transport/frame_transformations.py:48:5: RET505 [*] Unnecessary `else` after `return` statement
tardis/transport/montecarlo/__init__.py:14:1: E402 Module level import not at top of file
tardis/transport/montecarlo/__init__.py:24:1: E402 Module level import not at top of file
tardis/transport/montecarlo/__init__.py:25:5: F401 `tardis.transport.montecarlo.packets.packet_collections.PacketCollection` imported but unused; consider removing, adding to `__all__`, or using a redundant alias
tardis/transport/montecarlo/__init__.py:27:1: E402 Module level import not at top of file
tardis/transport/montecarlo/__init__.py:27:66: F401 `tardis.transport.montecarlo.packets.radiative_packet.RPacket` imported but unused; consider removing, adding to `__all__`, or using a redundant alias
tardis/transport/montecarlo/estimators/__init__.py:2:5: F401 `tardis.transport.montecarlo.estimators.base.EstimatedRadiationFieldProperties` imported but unused; consider removing, adding to `__all__`, or using a redundant alias
tardis/transport/montecarlo/estimators/continuum_radfield_properties.py:3:17: F401 [*] `numpy` imported but unused
tardis/transport/montecarlo/estimators/continuum_radfield_properties.py:5:30: F401 [*] `astropy.units` imported but unused
tardis/transport/montecarlo/estimators/tests/test_continuum_property_solver.py:1:1: INP001 File `tardis/transport/montecarlo/estimators/tests/test_continuum_property_solver.py` is part of an implicit namespace package. Add an `__init__.py`.
tardis/transport/montecarlo/estimators/tests/test_continuum_property_solver.py:36:55: F821 Undefined name `u`
tardis/transport/montecarlo/estimators/util.py:1:1: I001 [*] Import block is un-sorted or un-formatted
tardis/transport/montecarlo/estimators/util.py:66:32: NPY201 `np.trapz` will be removed in NumPy 2.0. Use `numpy.trapezoid` on NumPy 2.0, or ignore this warning on earlier versions.
tardis/transport/montecarlo/packet_source/__init__.py:9:1: I001 [*] Import block is un-sorted or un-formatted
tardis/transport/montecarlo/packets/packet_trackers.py:199:1: W293 [*] Blank line contains whitespace
tardis/transport/montecarlo/packets/packet_trackers.py:202:1: W293 [*] Blank line contains whitespace
tardis/transport/montecarlo/packets/packet_trackers.py:213:1: W293 [*] Blank line contains whitespace
tardis/transport/montecarlo/packets/packet_trackers.py:216:1: W293 [*] Blank line contains whitespace
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tardis/transport/montecarlo/packets/radiative_packet.py:1:1: I001 [*] Import block is un-sorted or un-formatted
tardis/transport/montecarlo/packets/tests/test_packet.py:1:1: I001 [*] Import block is un-sorted or un-formatted
tardis/transport/montecarlo/packets/tests/test_packet.py:22:1: E402 Module level import not at top of file
tardis/transport/montecarlo/packets/tests/test_vpacket.py:12:1: E402 Module level import not at top of file
tardis/transport/montecarlo/packets/virtual_packet.py:1:1: I001 [*] Import block is un-sorted or un-formatted
tardis/transport/montecarlo/r_packet_transport.py:115:13: RET508 [*] Unnecessary `elif` after `break` statement
tardis/transport/montecarlo/single_packet_loop.py:1:1: I001 [*] Import block is un-sorted or un-formatted
tardis/transport/montecarlo/tests/conftest.py:7:44: F401 [*] `tardis.opacities.opacity_state.opacity_state_initialize` imported but unused
tardis/transport/montecarlo/tests/test_montecarlo.py:26:1: E402 Module level import not at top of file
tardis/transport/montecarlo/tests/test_montecarlo.py:31:1: E402 Module level import not at top of file
tardis/transport/montecarlo/tests/test_montecarlo.py:47:5: PT021 Use `yield` instead of `request.addfinalizer`
tardis/transport/montecarlo/tests/test_montecarlo.py:104:5: F811 Redefinition of unused `test_get_random_mu_different_output` from line 95
tardis/transport/montecarlo/tests/test_montecarlo.py:384:5: F821 Undefined name `mc`
tardis/transport/montecarlo/tests/test_montecarlo.py:470:5: F821 Undefined name `mc`
tardis/transport/montecarlo/tests/test_montecarlo.py:471:5: F821 Undefined name `mc`
tardis/transport/montecarlo/tests/test_montecarlo.py:479:5: F821 Undefined name `mc`
tardis/transport/montecarlo/tests/test_montecarlo.py:496:5: F821 Undefined name `mc`
tardis/transport/montecarlo/tests/test_montecarlo.py:501:5: F821 Undefined name `mc`
tardis/transport/montecarlo/tests/test_montecarlo.py:524:9: F821 Undefined name `transport`
tardis/transport/montecarlo/tests/test_montecarlo.py:525:9: F821 Undefined name `transport`
tardis/transport/montecarlo/tests/test_montecarlo.py:526:9: F821 Undefined name `transport`
tardis/transport/montecarlo/tests/test_montecarlo.py:527:9: F821 Undefined name `transport`
tardis/transport/montecarlo/tests/test_montecarlo.py:529:5: F821 Undefined name `mc`
tardis/transport/montecarlo/tests/test_montecarlo.py:542:5: F821 Undefined name `mc`
tardis/transport/montecarlo/tests/test_montecarlo.py:566:5: F821 Undefined name `mc`
tardis/transport/montecarlo/tests/test_montecarlo.py:579:5: F821 Undefined name `mc`
tardis/transport/montecarlo/tests/test_numba_interface.py:1:1: I001 [*] Import block is un-sorted or un-formatted
tardis/transport/tests/test_doppler_factor.py:1:1: INP001 File `tardis/transport/tests/test_doppler_factor.py` is part of an implicit namespace package. Add an `__init__.py`.
tardis/util/base.py:19:37: F401 [*] `tardis.util.environment.Environment` imported but unused
tardis/util/base.py:180:20: NPY201 `np.trapz` will be removed in NumPy 2.0. Use `numpy.trapezoid` on NumPy 2.0, or ignore this warning on earlier versions.
tardis/util/base.py:498:5: E722 Do not use bare `except`
tardis/util/environment.py:1:1: I001 [*] Import block is un-sorted or un-formatted
tardis/util/environment.py:8:28: W291 [*] Trailing whitespace
tardis/util/environment.py:14:1: W293 [*] Blank line contains whitespace
tardis/util/environment.py:18:1: W293 Blank line contains whitespace
tardis/util/environment.py:26:9: RET505 [*] Unnecessary `elif` after `return` statement
tardis/util/environment.py:37:1: W293 [*] Blank line contains whitespace
tardis/util/environment.py:44:1: W293 [*] Blank line contains whitespace
tardis/util/environment.py:51:1: W293 [*] Blank line contains whitespace
tardis/util/environment.py:64:1: W293 [*] Blank line contains whitespace
tardis/util/environment.py:77:9: RET505 [*] Unnecessary `elif` after `return` statement
tardis/util/environment.py:86:1: W293 Blank line contains whitespace
tardis/util/environment.py:110:1: W293 Blank line contains whitespace
tardis/util/environment.py:117:1: W293 [*] Blank line contains whitespace
tardis/util/environment.py:122:1: W293 Blank line contains whitespace
tardis/util/environment.py:128:45: W291 [*] Trailing whitespace
tardis/util/environment.py:129:43: W291 [*] Trailing whitespace
tardis/util/environment.py:130:42: W291 [*] Trailing whitespace
tardis/util/panel_init.py:1:1: I001 [*] Import block is un-sorted or un-formatted
tardis/util/panel_init.py:4:8: F401 [*] `os` imported but unused
tardis/util/panel_init.py:11:92: W291 [*] Trailing whitespace
tardis/util/panel_init.py:43:1: W293 [*] Blank line contains whitespace
tardis/visualization/__init__.py:3:1: I001 [*] Import block is un-sorted or un-formatted
tardis/visualization/__init__.py:3:57: F401 `tardis.visualization.tools.convergence_plot.ConvergencePlots` imported but unused; consider removing, adding to `__all__`, or using a redundant alias
tardis/visualization/__init__.py:4:49: F401 `tardis.visualization.tools.liv_plot.LIVPlotter` imported but unused; consider removing, adding to `__all__`, or using a redundant alias
tardis/visualization/__init__.py:5:53: F401 `tardis.visualization.tools.rpacket_plot.RPacketPlotter` imported but unused; consider removing, adding to `__all__`, or using a redundant alias
tardis/visualization/__init__.py:6:50: F401 `tardis.visualization.tools.sdec_plot.SDECPlotter` imported but unused; consider removing, adding to `__all__`, or using a redundant alias
tardis/visualization/__init__.py:7:59: F401 `tardis.visualization.widgets.custom_abundance.CustomAbundanceWidget` imported but unused; consider removing, adding to `__all__`, or using a redundant alias
tardis/visualization/__init__.py:8:51: F401 `tardis.visualization.widgets.grotrian.GrotrianWidget` imported but unused; consider removing, adding to `__all__`, or using a redundant alias
tardis/visualization/__init__.py:9:52: F401 `tardis.visualization.widgets.line_info.LineInfoWidget` imported but unused; consider removing, adding to `__all__`, or using a redundant alias
tardis/visualization/__init__.py:11:5: F401 `tardis.visualization.widgets.shell_info.shell_info_from_hdf` imported but unused; consider removing, adding to `__all__`, or using a redundant alias
tardis/visualization/__init__.py:12:5: F401 `tardis.visualization.widgets.shell_info.shell_info_from_simulation` imported but unused; consider removing, adding to `__all__`, or using a redundant alias
tardis/visualization/__init__.py:17:1: E402 Module level import not at top of file
tardis/visualization/__init__.py:17:1: I001 [*] Import block is un-sorted or un-formatted
tardis/visualization/__init__.py:18:36: W292 [*] No newline at end of file
tardis/visualization/conftest.py:1:1: I001 [*] Import block is un-sorted or un-formatted
tardis/visualization/conftest.py:4:25: F811 [*] Redefinition of unused `run_tardis` from line 1
tardis/visualization/conftest.py:38:15: W292 [*] No newline at end of file
tardis/visualization/plot_util.py:3:1: I001 [*] Import block is un-sorted or un-formatted
tardis/visualization/plot_util.py:56:5: RET505 [*] Unnecessary `else` after `return` statement
tardis/visualization/sdec/util.py:117:9: RET506 [*] Unnecessary `else` after `raise` statement
tardis/visualization/sdec/util.py:275:9: RET506 [*] Unnecessary `else` after `raise` statement
tardis/visualization/sdec/util.py:312:9: UP034 [*] Avoid extraneous parentheses
tardis/visualization/tests/test_plot_util.py:1:1: I001 [*] Import block is un-sorted or un-formatted
tardis/visualization/tools/convergence_plot.py:3:1: I001 [*] Import block is un-sorted or un-formatted
tardis/visualization/tools/convergence_plot.py:4:8: F401 [*] `warnings` imported but unused
tardis/visualization/tools/lineid_plotter.py:20:5: D202 [*] No blank lines allowed after function docstring (found 1)
tardis/visualization/tools/rpacket_plot.py:2:1: UP035 `typing.Dict` is deprecated, use `dict` instead
tardis/visualization/tools/rpacket_plot.py:2:1: UP035 `typing.List` is deprecated, use `list` instead
tardis/visualization/tools/rpacket_plot.py:2:1: UP035 `typing.Tuple` is deprecated, use `tuple` instead
tardis/visualization/tools/rpacket_plot.py:457:10: UP006 [*] Use `tuple` instead of `Tuple` for type annotation
tardis/visualization/tools/rpacket_plot.py:457:40: UP006 [*] Use `list` instead of `List` for type annotation
tardis/visualization/tools/rpacket_plot.py:535:10: UP006 [*] Use `tuple` instead of `Tuple` for type annotation
tardis/visualization/tools/rpacket_plot.py:570:1: W293 [*] Blank line contains whitespace
tardis/visualization/tools/rpacket_plot.py:596:10: UP006 [*] Use `tuple` instead of `Tuple` for type annotation
tardis/visualization/tools/rpacket_plot.py:662:10: UP006 [*] Use `list` instead of `List` for type annotation
tardis/visualization/tools/rpacket_plot.py:706:16: UP007 [*] Use `X | Y` for type annotations
tardis/visualization/tools/rpacket_plot.py:781:64: UP006 [*] Use `list` instead of `List` for type annotation
tardis/visualization/tools/rpacket_plot.py:781:69: UP006 [*] Use `dict` instead of `Dict` for type annotation
tardis/visualization/tools/sdec_plot.py:8:1: I001 [*] Import block is un-sorted or un-formatted
tardis/visualization/tools/tests/test_convergence_plot.py:3:1: I001 [*] Import block is un-sorted or un-formatted
tardis/visualization/tools/tests/test_convergence_plot.py:14:25: F811 [*] Redefinition of unused `defaultdict` from line 3
tardis/visualization/tools/tests/test_convergence_plot.py:15:32: F811 [*] Redefinition of unused `go` from line 6
tardis/visualization/tools/tests/test_convergence_plot.py:16:30: F811 [*] Redefinition of unused `u` from line 8
tardis/visualization/tools/tests/test_lineid_plotter.py:1:1: I001 [*] Import block is un-sorted or un-formatted
tardis/visualization/tools/tests/test_lineid_plotter.py:7:1: E402 Module level import not at top of file
tardis/visualization/tools/tests/test_lineid_plotter.py:7:1: I001 [*] Import block is un-sorted or un-formatted
tardis/visualization/tools/tests/test_liv_plot.py:1:1: I001 [*] Import block is un-sorted or un-formatted
tardis/visualization/tools/tests/test_liv_plot.py:298:29: ISC003 [*] Explicitly concatenated string should be implicitly concatenated
tardis/visualization/tools/tests/test_sdec_plot.py:2:1: I001 [*] Import block is un-sorted or un-formatted
tardis/visualization/tools/tests/test_sdec_plot.py:276:29: ISC003 [*] Explicitly concatenated string should be implicitly concatenated
tardis/visualization/tools/tests/test_sdec_plot.py:332:9: F811 Redefinition of unused `test_generate_plot_mpl` from line 243
tardis/visualization/widgets/custom_abundance.py:3:1: I001 [*] Import block is un-sorted or un-formatted
tardis/visualization/widgets/custom_abundance.py:741:16: RUF021 [*] Parenthesize `a and b` expressions when chaining `and` and `or` together, to make the precedence clear
tardis/visualization/widgets/custom_abundance.py:1131:9: RET505 [*] Unnecessary `else` after `return` statement
tardis/visualization/widgets/custom_abundance.py:1422:9: RET506 [*] Unnecessary `else` after `raise` statement
tardis/visualization/widgets/custom_abundance.py:1725:9: F811 Redefinition of unused `input_d_time_0_eventhandler` from line 1714
tardis/visualization/widgets/custom_abundance.py:1755:13: F821 Undefined name `display`
tardis/visualization/widgets/custom_abundance.py:1757:13: F821 Undefined name `display`
tardis/visualization/widgets/custom_abundance.py:1759:13: F821 Undefined name `display`
tardis/visualization/widgets/grotrian.py:38:5: SIM103 Return the condition `transform in [np.log, np.log10]` directly
tardis/visualization/widgets/grotrian.py:612:35: ISC003 [*] Explicitly concatenated string should be implicitly concatenated
tardis/visualization/widgets/grotrian.py:757:35: ISC003 [*] Explicitly concatenated string should be implicitly concatenated
tardis/visualization/widgets/grotrian.py:1180:9: RET505 [*] Unnecessary `elif` after `return` statement
tardis/visualization/widgets/line_info.py:3:1: I001 [*] Import block is un-sorted or un-formatted
tardis/visualization/widgets/tests/test_custom_abundance.py:224:37: RUF015 Prefer `next(iter(unique_v))` over single element slice
tardis/visualization/widgets/tests/test_line_info.py:11:1: E402 Module level import not at top of file
tardis/visualization/widgets/tests/test_shell_info.py:6:1: E402 Module level import not at top of file
tardis/visualization/widgets/util.py:3:1: I001 [*] Import block is un-sorted or un-formatted
tardis/workflows/high_energy/tests/conftest.py:5:1: I001 [*] Import block is un-sorted or un-formatted
tardis/workflows/simple_tardis_workflow.py:258:17: G004 Logging statement uses f-string
tardis/workflows/simple_tardis_workflow.py:484:17: G004 Logging statement uses f-string
tardis/workflows/standard_tardis_workflow.py:170:13: G004 Logging statement uses f-string
tardis/workflows/standard_tardis_workflow.py:210:17: G004 Logging statement uses f-string
tardis/workflows/tests/test_workflows.py:1:1: I001 [*] Import block is un-sorted or un-formatted
tardis/workflows/tests/test_workflows.py:2:21: F401 [*] `pathlib.Path` imported but unused
tardis/workflows/tests/test_workflows.py:7:51: F401 [*] `tardis.io.configuration.config_reader.Configuration` imported but unused
tardis/workflows/util.py:1:1: I001 [*] Import block is un-sorted or un-formatted
tardis/workflows/v_inner_solver.py:16:3: TD005 Missing issue description after `TODO`
tardis/workflows/v_inner_solver.py:278:17: G004 Logging statement uses f-string
tardis/workflows/v_inner_solver.py:305:17: G004 Logging statement uses f-string
tardis/workflows/v_inner_solver.py:408:17: G004 Logging statement uses f-string
tardis/workflows/workflow_logging.py:69:13: G004 Logging statement uses f-string
tardis/workflows/workflow_logging.py:107:21: G004 Logging statement uses f-string
Found 1132 errors.
[*] 523 fixable with the `--fix` option (102 hidden fixes can be enabled with the `--unsafe-fixes` option).
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Codecov Report✅ All modified and coverable lines are covered by tests. Additional details and impacted files@@ Coverage Diff @@
## master #3312 +/- ##
==========================================
- Coverage 68.51% 68.26% -0.26%
==========================================
Files 175 175
Lines 13385 13385
==========================================
- Hits 9171 9137 -34
- Misses 4214 4248 +34 ☔ View full report in Codecov by Sentry. 🚀 New features to boost your workflow:
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*beep* *bop* Significantly changed benchmarks: DetailsAll benchmarks: DetailsBenchmarks that have stayed the same:
| Change | Before [0a0cfdc8] <master> | After [f2a78ef9] | Ratio | Benchmark (Parameter) |
|----------|------------------------------|---------------------|---------|-------------------------------------------------------------------------------------------------------------------------------------|
| | 511±200ns | 581±100ns | ~1.14 | opacities_opacity.BenchmarkMontecarloMontecarloNumbaOpacities.time_compton_opacity_calculation |
| | 50.0±20μs | 44.6±20μs | ~0.89 | transport_montecarlo_interaction.BenchmarkTransportMontecarloInteraction.time_line_emission |
| | 7.87±2μs | 6.96±2μs | ~0.89 | transport_montecarlo_vpacket.BenchmarkMontecarloMontecarloNumbaVpacket.time_trace_vpacket_volley |
| | 71.5±30μs | 61.3±30μs | ~0.86 | transport_montecarlo_interaction.BenchmarkTransportMontecarloInteraction.time_line_scatter |
| | 1.66±0.5μs | 1.41±0.4μs | ~0.85 | transport_geometry_calculate_distances.BenchmarkTransportGeometryCalculateDistances.time_calculate_distance_line |
| | 63.0±0.4ms | 53.5±1ms | ~0.85 | transport_montecarlo_packet_trackers.BenchmarkTransportMontecarloPacketTrackers.time_rpacket_trackers_to_dataframe |
| | 2.31±2μs | 1.94±2μs | ~0.84 | transport_montecarlo_estimators_radfield_estimator_calcs.BenchmarkMontecarloMontecarloNumbaPacket.time_update_line_estimators |
| | 25.6±7μs | 21.2±5μs | ~0.83 | transport_montecarlo_packet_trackers.BenchmarkTransportMontecarloPacketTrackers.time_generate_rpacket_last_interaction_tracker_list |
| | 3.76±0.2μs | 2.84±0.7μs | ~0.75 | transport_montecarlo_vpacket.BenchmarkMontecarloMontecarloNumbaVpacket.time_trace_vpacket_within_shell |
| | 2.50±0.01ms | 2.68±0.04ms | 1.07 | transport_montecarlo_main_loop.BenchmarkTransportMontecarloMontecarloMainLoop.time_montecarlo_main_loop |
| | 2.60±0.3ms | 2.78±0.4ms | 1.07 | transport_montecarlo_single_packet_loop.BenchmarkTransportMontecarloSinglePacketLoop.time_single_packet_loop |
| | 572±200ns | 601±200ns | 1.05 | opacities_opacity.BenchmarkMontecarloMontecarloNumbaOpacities.time_photoabsorption_opacity_calculation |
| | 3.68±0.01ms | 3.76±0.02ms | 1.02 | opacities_opacity_state.BenchmarkOpacitiesOpacityState.time_opacity_state_initialize('macroatom') |
| | 6.44±1μs | 6.48±1μs | 1.01 | transport_montecarlo_vpacket.BenchmarkMontecarloMontecarloNumbaVpacket.time_trace_vpacket |
| | 1.05±0m | 1.05±0m | 1.00 | run_tardis.BenchmarkRunTardis.time_run_tardis_rpacket_tracking |
| | 1.02±0m | 1.02±0m | 1.00 | spectrum_formal_integral.BenchmarkTransportMontecarloFormalIntegral.time_FormalIntegrator_functions |
| | 37.0±0.06s | 36.8±0.01s | 0.99 | run_tardis.BenchmarkRunTardis.time_run_tardis |
| | 1.16±0μs | 1.15±0μs | 0.99 | transport_geometry_calculate_distances.BenchmarkTransportGeometryCalculateDistances.time_calculate_distance_boundary |
| | 1.13±0μs | 1.10±0μs | 0.97 | spectrum_formal_integral.BenchmarkTransportMontecarloFormalIntegral.time_intensity_black_body |
| | 674±1ns | 654±2ns | 0.97 | transport_montecarlo_interaction.BenchmarkTransportMontecarloInteraction.time_thomson_scatter |
| | 37.0±0.05μs | 35.8±0.05μs | 0.97 | transport_montecarlo_packet_trackers.BenchmarkTransportMontecarloPacketTrackers.time_generate_rpacket_tracker_list |
| | 581±200ns | 541±200ns | 0.93 | opacities_opacity.BenchmarkMontecarloMontecarloNumbaOpacities.time_pair_creation_opacity_calculation |
| | 3.70±0.5μs | 3.39±0.5μs | 0.92 | transport_montecarlo_vpacket.BenchmarkMontecarloMontecarloNumbaVpacket.time_trace_bad_vpacket |
| | 2.91±0.02ms | 2.65±0ms | 0.91 | opacities_opacity_state.BenchmarkOpacitiesOpacityState.time_opacity_state_initialize('scatter') |
If you want to see the graph of the results, you can check it here |
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*beep* *bop*
Hi, human.
I prepared everything for a new TARDIS release.