Structural Bioinformatics Laboratory
- 15 followers
- San Diego Supercomputer Center, UCSD
- http://bioinformatics.sdsc.edu
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- mcp-proto-okn Public
A Model Context Protocol (MCP) server that provides tools for querying SPARQL endpoints, with specialized support for NSF-funded Proto-OKN (Prototype Open Knowledge Network) knowledge graphs hosted on the FRINK platform.
sbl-sdsc/mcp-proto-okn’s past year of commit activity - df-parallel Public
Comparison of Dataframe libraries for parallel processing of large tabular files on CPU and GPU.
sbl-sdsc/df-parallel’s past year of commit activity - kg-import Public
kg-import automates the ingestion of heterogeneous datasets into a Knowledge Graph.
sbl-sdsc/kg-import’s past year of commit activity - neo4j-ipycytoscape Public
Demo of Neo4j graph visualization with the ipycytoscape Jupyter Lab extension
sbl-sdsc/neo4j-ipycytoscape’s past year of commit activity - mmtf-pyspark Public
Methods for the parallel and distributed analysis and mining of the Protein Data Bank using MMTF and Apache Spark.
sbl-sdsc/mmtf-pyspark’s past year of commit activity - kg-onto Public
Create Node and Relationship files from BioPortal ontologies for import into Property Graphs
sbl-sdsc/kg-onto’s past year of commit activity
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