[RTR]Convert gui to new types #975

EastWest14 · 2025-05-01T16:52:23Z

#927

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New Feature Submissions:

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Changes to Core Features:

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Have you written new tests for your core changes, as applicable?

This change is

EastWest14 · 2025-05-02T11:03:16Z

@EveCharbie RTR

EastWest14 · 2025-05-02T12:02:17Z

@EveCharbie RTR also

EveCharbie

Thanks again !
Sorry I was not as explicit this time.
On Monday I will be on Linux, so let me know if you need help determining the type of some of them.

Reviewed 6 of 6 files at r1, all commit messages.
Reviewable status: all files reviewed, 65 unresolved discussions (waiting on @EastWest14)

bioptim/gui/serializable_class.py line 140 at r1 (raw file):

AnyDict

Code quote:

def serialize(self):

bioptim/gui/online_callback_abstract.py line 95 at r1 (raw file):

    @staticmethod
    def get_name_in(i: Int) -> Int:

Not you fault, but should have been a Str
def get_name_in(i: Int) -> Str:

Code quote:

def get_name_in(i: Int) -> Int:

bioptim/gui/online_callback_abstract.py line 148 at r1 (raw file):

    @abstractmethod
    def eval(self, arg: AnyIterable, enforce: Bool = False) -> IntIterable:

-> IntIterable | None (I don't know if you have an "optional" type for this case)

Code quote:

eval(self, arg: AnyIterable, enforce: Bool = False) -> IntIterable

bioptim/gui/online_callback_multiprocess.py line 36 at r1 (raw file):

        self.plot_process.start()

    def close(self):

-> None

Code quote:

def close(self):

bioptim/gui/online_callback_multiprocess.py line 39 at r1 (raw file):

        self.plot_process.kill()

    def eval(self, arg: AnyIterable, enforce: Bool = False) -> IntList:

-> IntList | None

Code quote:

eval(self, arg: AnyIterable, enforce: Bool = False) -> IntList:

bioptim/gui/online_callback_multiprocess.py line 79 at r1 (raw file):

            self._ocp: OcpSerializable = ocp
            self._plotter: PlotOcp = None
            self._update_time = 0.001

self._update_time: float = 0.001

Code quote:

self._update_time = 0.001

bioptim/misc/parameters_types.py line 19 at r1 (raw file):

AnyIterableOptional: TypeAlias = list[Any] | tuple[Any, ...] | None
AnyIterableOrRange: TypeAlias = slice | list | range
AnyIterableOrRangeOptional: TypeAlias = slice | list | range | None

Should we add tuple ?
AnyIterableOrRange: TypeAlias = slice | list | range | tuple

Code quote:

AnyIterableOrRange: TypeAlias = slice | list | range
AnyIterableOrRangeOptional: TypeAlias = slice | list | range | None

bioptim/gui/serializable_class.py line 34 at r1 (raw file):

    @classmethod
    def from_casadi_function(cls, casadi_function):

casadi_function: Function if it does not throw an error

Code quote:

def from_casadi_function(cls, casadi_function):

bioptim/gui/serializable_class.py line 47 at r1 (raw file):

        )

    def serialize(self):

-> dict[Str, Int]

Code quote:

def serialize(self):

bioptim/gui/serializable_class.py line 53 at r1 (raw file):

    @classmethod
    def deserialize(cls, data):

data: dict[Str, Int]

Code quote:

def deserialize(cls, data):

bioptim/gui/serializable_class.py line 58 at r1 (raw file):

        )

    def size_in(self, key: str) -> Int:

key: Str

Code quote:

def size_in(self, key: str) -> Int:

bioptim/gui/serializable_class.py line 79 at r1 (raw file):

        )

    def serialize(self):

-> AnyDict

Code quote:

def serialize(self):

bioptim/gui/serializable_class.py line 111 at r1 (raw file):

        )

    def serialize(self):

-> AnyDict

Code quote:

def serialize(self):

bioptim/gui/serializable_class.py line 164 at r1 (raw file):

        return cls(bounds=bounds)

    def serialize(self):

-> Anydict

Code quote:

def serialize(self):

bioptim/gui/serializable_class.py line 195 at r1 (raw file):

        )

    def check_and_adjust_dimensions(self, n_elements: int, n_shooting: int):

Int

Code quote:

def check_and_adjust_dimensions(self, n_elements: int, n_shooting: int):

bioptim/gui/serializable_class.py line 202 at r1 (raw file):

    @property
    def min(self):

-> NpArray

Code quote:

def min(self):

bioptim/gui/serializable_class.py line 206 at r1 (raw file):

    @property
    def max(self):

-> NpArray

Code quote:

def max(self):

bioptim/gui/serializable_class.py line 277 at r1 (raw file):

        )

    def serialize(self):

-> AnyDict

Code quote:

def serialize(self):

bioptim/gui/serializable_class.py line 312 at r1 (raw file):

        )

    def function(self, *args, **kwargs):

-> Callable

Code quote:

def function(self, *args, **kwargs):

bioptim/gui/serializable_class.py line 342 at r1 (raw file):

        )

    def serialize(self):

-> AnyDict

Code quote:

def serialize(self):

bioptim/gui/serializable_class.py line 430 at r1 (raw file):

        )

    def serialize(self):

-> AnyDict

Code quote:

def serialize(self):

bioptim/gui/serializable_class.py line 507 at r1 (raw file):

        )

    def serialize(self):

-> AnyDict

Code quote:

def serialize(self):

bioptim/gui/serializable_class.py line 583 at r1 (raw file):

        )

    def serialize(self):

-> AnyDict

Code quote:

def serialize(self):

bioptim/gui/online_callback_server.py line 103 at r1 (raw file):

        self._get_data_interval = 1.0
        self._update_plot_interval = 10
        self._force_redraw = False

    self._get_data_interval: Float = 1.0
    self._update_plot_interval: Int = 10
    self._force_redraw: Bool = False

Code quote:

        self._get_data_interval = 1.0
        self._update_plot_interval = 10
        self._force_redraw = False

bioptim/gui/online_callback_server.py line 108 at r1 (raw file):

        self._host = host if host else _DEFAULT_HOST
        self._port = port if port else _DEFAULT_PORT
        self._socket = socket.socket(socket.AF_INET, socket.SOCK_STREAM)

    self._host: Str = host if host else _DEFAULT_HOST
    self._port: Int = port if port else _DEFAULT_PORT
    self._socket: socket.socket = socket.socket(socket.AF_INET, socket.SOCK_STREAM)

Code quote:

        self._host = host if host else _DEFAULT_HOST
        self._port = port if port else _DEFAULT_PORT
        self._socket = socket.socket(socket.AF_INET, socket.SOCK_STREAM)

bioptim/gui/online_callback_server.py line 111 at r1 (raw file):

        self._plotter: PlotOcp = None

        self._should_send_ok_to_client_on_new_data = False

self._should_send_ok_to_client_on_new_data: Bool = False

Code quote:

self._should_send_ok_to_client_on_new_data = False

bioptim/gui/online_callback_server.py line 491 at r1 (raw file):

        self._socket = socket.socket(socket.AF_INET, socket.SOCK_STREAM)

        self._should_wait_ok_to_client_on_new_data = platform.system() == "Darwin"

    self._host: Str = host if host else _DEFAULT_HOST
    self._port: Int = port if port else _DEFAULT_PORT
    self._socket: socket.socket = socket.socket(socket.AF_INET, socket.SOCK_STREAM)

    self._should_wait_ok_to_client_on_new_data: Bool = platform.system() == "Darwin"

Code quote:

        self._host = host if host else _DEFAULT_HOST
        self._port = port if port else _DEFAULT_PORT
        self._socket = socket.socket(socket.AF_INET, socket.SOCK_STREAM)

        self._should_wait_ok_to_client_on_new_data = platform.system() == "Darwin"

bioptim/gui/online_callback_server.py line 585 at r1 (raw file):

        self._socket.close()

    def eval(self, arg: AnyIterable, enforce: Bool = False) -> IntIterable:

-> IntIterable | None

Code quote:

def eval(self, arg: AnyIterable, enforce: Bool = False) -> IntIterable:

bioptim/gui/plot.py line 86 at r1 (raw file):

        linestyle: StrOptional = None,
        ylim: AnyIterableOptional = None,
        bounds: Bounds = None,

Bounds | None

Code quote:

bounds: Bounds = None,

bioptim/gui/plot.py line 148 at r1 (raw file):

        self.integration_rule = integration_rule
        self.parameters = parameters
        self.all_variables_in_one_subplot = all_variables_in_one_subplot

In general, could we want to type the extended attributes from a class the first time they appear in the init (like self.function: Callable = update_function).
Let me know if you need help understanding the type of each one :)

Code quote:

        self.function = update_function
        self.type = plot_type
        if axes_idx is None:
            self.phase_mappings = None  # Will be set later
        elif isinstance(axes_idx, (tuple, list)):
            self.phase_mappings = BiMapping(to_second=Mapping(axes_idx), to_first=Mapping(axes_idx))
        elif isinstance(axes_idx, BiMapping):
            self.phase_mappings = axes_idx
        else:
            raise RuntimeError("phase_mapping must be a list or a Mapping")
        self.legend = legend if legend is not None else ()
        self.combine_to = combine_to
        self.color = color
        self.linestyle = linestyle
        self.ylim = ylim
        self.bounds = bounds
        self.node_idx = node_idx  # If this is None, it is all nodes and will be initialize when we know the dimension of the problem
        self.label = label
        self.compute_derivative = compute_derivative
        if integration_rule == QuadratureRule.MIDPOINT or integration_rule == QuadratureRule.RECTANGLE_RIGHT:
            raise NotImplementedError(f"{integration_rule} has not been implemented yet.")
        self.integration_rule = integration_rule
        self.parameters = parameters
        self.all_variables_in_one_subplot = all_variables_in_one_subplot

bioptim/gui/plot.py line 229 at r1 (raw file):

        shooting_type: Shooting = Shooting.MULTIPLE,
        integrator: SolutionIntegrator = SolutionIntegrator.OCP,
        dummy_phase_times: list[FloatList] = None,

dummy_phase_times: list[FloatList] | None = None,

Code quote:

dummy_phase_times: list[FloatList] = None,

bioptim/gui/plot.py line 273 at r1 (raw file):

        self.variable_sizes = []
        self.show_bounds = show_bounds
        self.shooting_type = shooting_type

Same here

Code quote:

        self.ocp = ocp
        self.plot_options = self._initialize_plot_options()
        self.n_nodes = 0
        self.t = []
        self.t_integrated = []
        self.integrator = integrator
        self.axes = {}
        self.plots = []
        self.plots_vertical_lines = []
        self.plots_bounds = []
        self.all_figures = []
        self.automatically_organize = automatically_organize
        self.n_vertical_windows = None
        self.n_horizontal_windows = None
        self.top_margin = None
        self.height_step = None
        self.width_step = None
        self.custom_plots = {}
        self.variable_sizes = []
        self.show_bounds = show_bounds
        self.shooting_type = shooting_type

bioptim/gui/plot.py line 299 at r1 (raw file):

        }

    def _initialize_additional_plots(self):

-> None

Code quote:

def _initialize_additional_plots(self):

bioptim/gui/plot.py line 313 at r1 (raw file):

            create_conditioning_plots(self.ocp)

    def _update_time_vector(self, phase_times):

-> None

Code quote:

def _update_time_vector(self, phase_times):

bioptim/gui/plot.py line 324 at r1 (raw file):

            self.t.append(np.linspace(float(time[0][0]), float(time[-1][-1]), nlp.n_states_nodes))

    def _create_plots(self, only_initialize_variables: Bool):

-> None

Code quote:

def _create_plots(self, only_initialize_variables: Bool):

bioptim/gui/plot.py line 349 at r1 (raw file):

            self._process_plots_for_nlp(i, nlp, all_keys_across_phases, y_min_all, y_max_all, only_initialize_variables)

    def _initialize_variable_sizes(self):

-> list[dict[Str, Int]]
(I don't think we need a new type for this since it is a very particular case)

Code quote:

def _initialize_variable_sizes(self):

bioptim/gui/plot.py line 374 at r1 (raw file):

        return variable_sizes

    def _collect_all_keys_across_phases(self):

->StrList

Code quote:

def _collect_all_keys_across_phases(self):

bioptim/gui/plot.py line 386 at r1 (raw file):

    def _process_plots_for_nlp(
        self, i: Int, nlp, all_keys_across_phases, y_min_all, y_max_all, only_initialize_variables
    ):

Unfortunately, I cannot test the plots on my mac, but if you put a break point in this function while running examples/getting_started/pendulum.py -> sol.graphs(), you should be able to see what the type of these input arguments is.

Code quote:

    def _process_plots_for_nlp(
        self, i: Int, nlp, all_keys_across_phases, y_min_all, y_max_all, only_initialize_variables
    ):

bioptim/gui/plot.py line 408 at r1 (raw file):

            self._create_plots_for_variable(i, nlp, variable, axes, y_min_all, y_max_all, y_range_var_idx)

    def _setup_axes_for_variable(self, i: Int, nlp, variable):

variable -> Str ?
-> Tuple[ ?, ? ]

Code quote:

def _setup_axes_for_variable(self, i: Int, nlp, variable):

bioptim/gui/plot.py line 434 at r1 (raw file):

        return axes, nb_subplots

    def _calculate_max_subplots(self, variable):

variable: ?

Code quote:

def _calculate_max_subplots(self, variable):

bioptim/gui/plot.py line 450 at r1 (raw file):

        )

    def _initialize_custom_plot(self, i: Int, variable):

variable: ?

Code quote:

def _initialize_custom_plot(self, i: Int, variable):

bioptim/gui/plot.py line 457 at r1 (raw file):

            ]

    def _create_plots_for_variable(self, i: Int, nlp, variable, axes, y_min_all, y_max_all, y_range_var_idx):

Same here

Code quote:

 def _create_plots_for_variable(self, i: Int, nlp, variable, axes, y_min_all, y_max_all, y_range_var_idx):

bioptim/gui/plot.py line 534 at r1 (raw file):

        return y_min, y_max

    def _create_plot_for_axis(self, i: Int, nlp, variable, ax):

Same

Code quote:

def _create_plot_for_axis(self, i: Int, nlp, variable, ax):

bioptim/gui/plot.py line 553 at r1 (raw file):

            raise RuntimeError(f"{plot_type} is not implemented yet")

    def _get_plot_color(self, variable, i: Int, plot_type):

Same

Code quote:

def _get_plot_color(self, variable, i: Int, plot_type):

bioptim/gui/plot.py line 559 at r1 (raw file):

        )

    def _create_plot_type_plot(self, i: Int, t, ax, color, label):

Same

Code quote:

def _create_plot_type_plot(self, i: Int, t, ax, color, label):

bioptim/gui/plot.py line 577 at r1 (raw file):

        )

    def _create_plot_type_integrated(self, i: Int, ax, color, label):

Same

Code quote:

def _create_plot_type_integrated(self, i: Int, ax, color, label):

bioptim/gui/plot.py line 592 at r1 (raw file):

        self.plots.append([PlotType.INTEGRATED, i, plots_integrated])

    def _create_plot_type_step(self, i: Int, t, ax, variable, color, label):

Same

Code quote:

def _create_plot_type_step(self, i: Int, t, ax, variable, color, label):

bioptim/gui/plot.py line 604 at r1 (raw file):

        )

    def _create_plot_type_point(self, i: Int, t, ax, color, label, variable):

Same

Code quote:

def _create_plot_type_point(self, i: Int, t, ax, color, label, variable):

bioptim/gui/plot.py line 616 at r1 (raw file):

        )

    def _add_legend_to_axes(self, axes):

Same

Code quote:

def _add_legend_to_axes(self, axes):

bioptim/gui/plot.py line 621 at r1 (raw file):

            self._legend_without_duplicate_labels(ax)

    def _legend_without_duplicate_labels(self, ax):

Same

Code quote:

def _legend_without_duplicate_labels(self, ax):

bioptim/gui/plot.py line 628 at r1 (raw file):

            ax.legend(*zip(*unique))

    def _add_vertical_lines_and_bounds(self, i: Int, nlp, variable, axes, mapping_to_first_index):

Same

Code quote:

def _add_vertical_lines_and_bounds(self, i: Int, nlp, variable, axes, mapping_to_first_index):

bioptim/gui/plot.py line 637 at r1 (raw file):

                    self._add_bounds_to_plot(i, nlp, variable, ctr, ax, mapping_to_first_index)

    def _add_vertical_lines(self, ax):

Same

Code quote:

def _add_vertical_lines(self, ax):

bioptim/gui/plot.py line 643 at r1 (raw file):

            self.plots_vertical_lines.append(ax.axvline(float(time), **self.plot_options["vertical_lines"]))

    def _add_bounds_to_plot(self, i: Int, nlp, variable, ctr, ax, mapping_to_first_index):

Same

Code quote:

def _add_bounds_to_plot(self, i: Int, nlp, variable, ctr, ax, mapping_to_first_index):

bioptim/gui/plot.py line 665 at r1 (raw file):

        self.plots_bounds.append([ax.step(self.t[i], bounds_max, where="post", **self.plot_options["bounds"]), i])

    def _add_new_axis(self, variable: Str, nb: Int, n_rows: Int, n_cols: Int):

-> ?

Code quote:

def _add_new_axis(self, variable: Str, nb: Int, n_rows: Int, n_cols: Int):

bioptim/gui/plot.py line 706 at r1 (raw file):

        return axes

    def _organize_windows(self, n_windows: Int):

-> None

Code quote:

def _organize_windows(self, n_windows: Int):

bioptim/gui/plot.py line 724 at r1 (raw file):

            self.width_step = width / self.n_vertical_windows

    def _spread_figures_on_screen(self):

-> None

Code quote:

 def _spread_figures_on_screen(self):

bioptim/gui/plot.py line 743 at r1 (raw file):

                fig.tight_layout()

    def find_phases_intersections(self):

-> list[float]

Code quote:

def find_phases_intersections(self):

bioptim/gui/plot.py line 841 at r1 (raw file):

        ydata: AnyIterable,
        **args: AnyDict,
    ):

-> None

Code quote:

    def update_data(
        self,
        xdata: AnyIterable,
        ydata: AnyIterable,
        **args: AnyDict,
    ):

bioptim/gui/plot.py line 876 at r1 (raw file):

    def _compute_y_from_plot_func(
        self, custom_plot: CustomPlot, phase_idx: Int, time_stepwise, dt, x_decision, x_stepwise, u, p, a, d
    ) -> list[FloatIterableorNpArray]:

time_stepwise: np.ndarray
dt: np.ndarray
x_decision: np.ndarray
x_stepwise: np.ndarray
u: np.ndarray
p: np.ndarray
a: np.ndarray
d: np.ndarray
-> list[FloatIterableorNpArray] | None

Code quote:

    def _compute_y_from_plot_func(
        self, custom_plot: CustomPlot, phase_idx: Int, time_stepwise, dt, x_decision, x_stepwise, u, p, a, d
    ) -> list[FloatIterableorNpArray]:

bioptim/gui/plot.py line 931 at r1 (raw file):

    def _compute_values_at_nodes(
        self, custom_plot, phase_idx, time_stepwise, dt, x, u, p, a, d, get_numerical_timeseries
    ):

Same as the one abonve

Code quote:

    def _compute_values_at_nodes(
        self, custom_plot, phase_idx, time_stepwise, dt, x, u, p, a, d, get_numerical_timeseries
    ):

bioptim/gui/plot.py line 962 at r1 (raw file):

        return all_y

    def _get_penalty_node_data(self, custom_plot, idx, time_stepwise, x, u, p, a, get_numerical_timeseries):

Same

Code quote:

def _get_penalty_node_data(self, custom_plot, idx, time_stepwise, x, u, p, a, get_numerical_timeseries):

bioptim/gui/plot.py line 1005 at r1 (raw file):

        return t0, x_node, u_node, p_node, a_node, d_node

    def _format_integrated_plot_data(self, custom_plot, all_y):

Dont' what the types are, but should be added

Code quote:

def _format_integrated_plot_data(self, custom_plot, all_y):

bioptim/gui/plot.py line 1018 at r1 (raw file):

        return out

    def _format_standard_plot_data(self, custom_plot, all_y):

Same

Code quote:

def _format_standard_plot_data(self, custom_plot, all_y):

bioptim/gui/plot.py line 1029 at r1 (raw file):

        return out

    def _update_xdata(self, phase_times):

phase_times: list[FloatList]
-> None

Code quote:

def _update_xdata(self, phase_times):

bioptim/gui/plot.py line 1062 at r1 (raw file):

                    self.plots_vertical_lines[p * n + i].set_xdata([float(time), float(time)])

    def _update_ydata(self, ydata: AnyIterable):

-> None

Code quote:

def _update_ydata(self, ydata: AnyIterable):

EastWest14 · 2025-05-04T22:24:46Z

@EveCharbie Updated. Not sure of type type for Axis, updated the rest

EveCharbie

@EastWest14 Thank you for this great work !
I have added a few commits, which pariterre should review before we merge (but he is still unavailable for the the next week at least).
FYI: I am going on vacation for a week, so I won't be available for reviewing. Have a nice week :)

Reviewed 6 of 6 files at r2, all commit messages.
Reviewable status: all files reviewed, 2 unresolved discussions (waiting on @EastWest14)

bioptim/gui/plot.py line 229 at r1 (raw file):

Previously, EveCharbie (Eve Charbonneau) wrote…

dummy_phase_times: list[FloatList] | None = None,

I've noticed you have a FloatListOptional, I think it is more appropriate

bioptim/gui/plot.py line 151 at r2 (raw file):

        self.ylim: DoubleFloatTuple | FloatList = ylim
        self.bounds: Bounds = bounds
        self.node_idx: AnyList = (

self.node_idx: IntIterable

Code quote:

self.node_idx: AnyList

EveCharbie

Reviewable status: complete! all files reviewed, all discussions resolved (waiting on @EastWest14)

pariterre

Reviewed 4 of 4 files at r3, all commit messages.
Reviewable status: complete! all files reviewed, all discussions resolved (waiting on @EastWest14)

pariterre · 2025-05-22T12:57:04Z

Looks good :) Thanks again for this work!

Type fixes for GUI dire.

0b2d3e4

EastWest14 force-pushed the convert_gui branch from b434b1a to 0b2d3e4 Compare May 2, 2025 10:43

EastWest14 changed the title ~~[WIP]Convert gui~~ [RTR]Convert gui May 2, 2025

EastWest14 mentioned this pull request May 2, 2025

Better type hints #927

Closed

EastWest14 changed the title ~~[RTR]Convert gui~~ [RTR]Convert gui to new types May 2, 2025

EastWest14 mentioned this pull request May 2, 2025

[RTM] Fully converted dynamics fatigue to new types #977

Merged

11 tasks

EveCharbie requested changes May 2, 2025

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EveCharbie changed the title ~~[RTR]Convert gui to new types~~ Convert gui to new types May 2, 2025

EastWest14 added 2 commits May 4, 2025 18:58

Updated types, including in plot.py.

765ce9b

FInalized gui fixes.

0d6adc3

EastWest14 changed the title ~~Convert gui to new types~~ [RTR]Convert gui to new types May 4, 2025

EastWest14 requested a review from EveCharbie May 4, 2025 22:24

EveCharbie requested changes May 5, 2025

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EveCharbie previously approved these changes May 5, 2025

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EveCharbie added 2 commits May 5, 2025 12:17

few changes (particularly plt.Axes)

cee7f7c

blacked

0b43ecc

EveCharbie dismissed their stale review via 0b43ecc May 5, 2025 08:18

pariterre approved these changes May 22, 2025

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pariterre merged commit 2180879 into pyomeca:master May 22, 2025
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[RTR]Convert gui to new types #975

[RTR]Convert gui to new types #975

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EastWest14 commented May 1, 2025 •

edited

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EastWest14 commented May 2, 2025

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EastWest14 commented May 2, 2025

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[RTR]Convert gui to new types #975

[RTR]Convert gui to new types #975

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EastWest14 commented May 1, 2025 • edited Loading Uh oh! There was an error while loading. Please reload this page.

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EastWest14 commented May 1, 2025 •

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