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Fail to install Python 3.13.0: "ld: library 'System' not found" #3091

@diachkow

Description

@diachkow

Too many issues will kill our team's development velocity, drastically.
Make sure you have checked all steps below.

Prerequisite

  • Make sure your problem is not listed in the common build problems.
  • Make sure no duplicated issue has already been reported in the pyenv issues. You should look for closed issues, too.
  • Make sure you are not asking us to help solving your specific issue.
    • GitHub issues is opened mainly for development purposes. If you want to ask someone to help solving your problem, go to some community site like Gitter, StackOverflow, etc.
  • Make sure your problem is not derived from packaging (e.g. Homebrew).
    • Please refer to the package documentation for the installation issues, etc.
  • Make sure your problem is not derived from plugins.
    • This repository is maintaining pyenv and the default python-build plugin only. Please refrain from reporting issues of other plugins here.

Description

  • Platform information (e.g. Ubuntu Linux 16.04): MacOS Sonoma 14.6.1
  • OS architecture (e.g. amd64): aarch64 (Apple Silicon M1 chip)
  • pyenv version: pyenv 2.4.15
  • Python version: 3.13.0
  • C Compiler information (e.g. gcc 7.3):
    Apple clang version 15.0.0 (clang-1500.3.9.4)
    Target: arm64-apple-darwin23.6.0
    Thread model: posix
    InstalledDir: /Library/Developer/CommandLineTools/usr/bin
    
  • Please attach the debug trace of the failing command as a gist: https://gist.github.com/diachkow/132769030596a2f7ffdff98202436d2e
  • If you have a problem with installing Python, please also attach config.log from the build directory: https://gist.github.com/diachkow/4771c3acb016797e3d1783f06fb9bd17

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