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Description
Is your feature request related to a problem?
The string and rich representations of Dataset and DataArrays are standardized. However, the DataTrees can become pretty complex structurally (unlike DataArrays and Dataset). Hence, adding visualizations capabilities to summarize would be helpful, like the pandas describe method, that summarizes a DataFrame.
Describing the DataTree can be a lite-weight string representation focusing on the structure of the tree only without the contents.
Describe the solution you'd like
Here is some code I used to achieve that goal:
# Example taken from
# https://xarray-datatree.readthedocs.io/en/latest/hierarchical-data.html#ancestry-in-an-evolutionary-tree
vertebrates = dt.DataTree.from_dict(
name="Vertebrae",
d={
"/Sharks": None,
"/Bony Skeleton/Ray-finned Fish": None,
"/Bony Skeleton/Four Limbs/Amphibians": None,
"/Bony Skeleton/Four Limbs/Amniotic Egg/Hair/Primates": None,
"/Bony Skeleton/Four Limbs/Amniotic Egg/Hair/Rodents & Rabbits": xr.Dataset(
{f"variable_{k}": None for k in "abc"}
),
"/Bony Skeleton/Four Limbs/Amniotic Egg/Two Fenestrae/Dinosaurs": xr.Dataset(
{f"variable_{k}": None for k in "abc"}
),
"/Bony Skeleton/Four Limbs/Amniotic Egg/Two Fenestrae/Birds": xr.Dataset(
{f"variable_{k}": None for k in "abc"}
),
},
)
def repr_datatree(
xdt: dt.DataTree,
*,
tabsize: int = 4,
offset: int = 1,
with_full_path: bool = False,
with_group_variables: bool = False,
):
lines = []
for node in xdt.subtree:
path = PurePosixPath(node.path)
tabs = len(path.parts)
lines.append(f'{" " * ((tabs - offset) * tabsize)}{(node.name) if not with_full_path else path}')
if with_group_variables:
for varname in node.ds.data_vars:
lines.append(f'{" " * (tabs * tabsize)}{path / varname if with_full_path else varname}')
return "\n".join(lines)
print(repr_datatree(vertebrates, with_full_path=False, with_group_variables=False))
Vertebrae
Sharks
Bony Skeleton
Ray-finned Fish
Four Limbs
Amphibians
Amniotic Egg
Hair
Primates
Rodents & Rabbits
Two Fenestrae
Dinosaurs
Birds
print(repr_datatree(vertebrates, with_full_path=False, with_group_variables=True))
Vertebrae
Sharks
Bony Skeleton
Ray-finned Fish
Four Limbs
Amphibians
Amniotic Egg
Hair
Primates
Rodents & Rabbits
variable_a
variable_b
variable_c
Two Fenestrae
Dinosaurs
variable_a
variable_b
variable_c
Birds
variable_a
variable_b
variable_c
print(repr_datatree(vertebrates, with_full_path=True, with_group_variables=False))
/
/Sharks
/Bony Skeleton
/Bony Skeleton/Ray-finned Fish
/Bony Skeleton/Four Limbs
/Bony Skeleton/Four Limbs/Amphibians
/Bony Skeleton/Four Limbs/Amniotic Egg
/Bony Skeleton/Four Limbs/Amniotic Egg/Hair
/Bony Skeleton/Four Limbs/Amniotic Egg/Hair/Primates
/Bony Skeleton/Four Limbs/Amniotic Egg/Hair/Rodents & Rabbits
/Bony Skeleton/Four Limbs/Amniotic Egg/Two Fenestrae
/Bony Skeleton/Four Limbs/Amniotic Egg/Two Fenestrae/Dinosaurs
/Bony Skeleton/Four Limbs/Amniotic Egg/Two Fenestrae/Birds
print(repr_datatree(vertebrates, with_full_path=True, with_group_variables=True))
/
/Sharks
/Bony Skeleton
/Bony Skeleton/Ray-finned Fish
/Bony Skeleton/Four Limbs
/Bony Skeleton/Four Limbs/Amphibians
/Bony Skeleton/Four Limbs/Amniotic Egg
/Bony Skeleton/Four Limbs/Amniotic Egg/Hair
/Bony Skeleton/Four Limbs/Amniotic Egg/Hair/Primates
/Bony Skeleton/Four Limbs/Amniotic Egg/Hair/Rodents & Rabbits
/Bony Skeleton/Four Limbs/Amniotic Egg/Hair/Rodents & Rabbits/variable_a
/Bony Skeleton/Four Limbs/Amniotic Egg/Hair/Rodents & Rabbits/variable_b
/Bony Skeleton/Four Limbs/Amniotic Egg/Hair/Rodents & Rabbits/variable_c
/Bony Skeleton/Four Limbs/Amniotic Egg/Two Fenestrae
/Bony Skeleton/Four Limbs/Amniotic Egg/Two Fenestrae/Dinosaurs
/Bony Skeleton/Four Limbs/Amniotic Egg/Two Fenestrae/Dinosaurs/variable_a
/Bony Skeleton/Four Limbs/Amniotic Egg/Two Fenestrae/Dinosaurs/variable_b
/Bony Skeleton/Four Limbs/Amniotic Egg/Two Fenestrae/Dinosaurs/variable_c
/Bony Skeleton/Four Limbs/Amniotic Egg/Two Fenestrae/Birds
/Bony Skeleton/Four Limbs/Amniotic Egg/Two Fenestrae/Birds/variable_a
/Bony Skeleton/Four Limbs/Amniotic Egg/Two Fenestrae/Birds/variable_b
/Bony Skeleton/Four Limbs/Amniotic Egg/Two Fenestrae/Birds/variable_c
def empty_datatree_structure(xdt: dt.DataTree) -> dt.DataTree:
# Print an empty datatree from a full structure (like a tree command)
return dt.DataTree.from_dict({k.path: None for k in xdt.leaves})
empty_datatree_structure(loaded_xdt)
Describe alternatives you've considered
No response
Additional context
Issue content taken from xarray-contrib/datatree#334