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Currently, the top-level sections of your documentation will become links in the header, and the left sidebar will only show the sub-sections for the active top-level section.
However, we've now seen many themes that instead want to define their own custom links in the top-level header, and then put the entire documentation structure in the left sidebar (similar to how a traditional Sphinx site works).
In this case, what sites usually do is add custom templating to the Sphinx Book Theme. Sites often use this in order to have the same theme across subsets of your documentation. for example: