This is a supplement to my PhD thesis titled "Formal modelling and approximation-based analysis for mode-switching population dynamics".
It contains the simulation examples used in the thesis.
Julia 1.4 is needed to run the code. Available from https://julialang.org/downloads/.
Easiest way to run the code is to use Julia's built-in package manager to clone the repository. For that, in Julia's REPL do
pkg> develop https://github.com/pihop/ThesisSupplement.jl
This clones this repository to the dev directory of the local Julia
installation.
For running example in Chapter 4 see:
examples/thesis_ch_4/running_ex/
The script run_simulation.sh generates the simulation data and run_plots.sh
plots the results.
For running example in Chapter 5 see:
examples/thesis_ch_5/running_ex/
The script run.sh generates the simulation data and plots the results.
The results in the results of Chapter 5 are based on examples in
examples/thesis_ch_5/maze_ex/
examples/thesis_ch_5/three_mode_ex/
These again come with their own run scrips to generate the data.
examples/thesis_ch_5/run_long.sh
calls both of these. Finally,
examples/thesis_ch_5/analyse.sh
produces the plots appearing in the thesis and the data for the tables (written
to examples/thesis_ch_5/output.txt.
For running example in Chapter 6 see:
examples/thesis_ch_6/running_ex/
The script run.sh generates the simulation data and generates the data for the
table.