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1. cbg-ethz/scDEF cbg-ethz/scDEF Public

   Deep exponential families for single-cell data.

   Python 20 1

2. cbg-ethz/SCICoNE cbg-ethz/SCICoNE Public

   Single-cell copy number calling and event history reconstruction.

   C++ 28 9

3. SpOTr SpOTr Public

   Python

4. scPhyTr scPhyTr Public

   Phylogenetic comparative methods for single-cell data.

   Jupyter Notebook

5. cbg-ethz/SCATrEx cbg-ethz/SCATrEx Public

   Map single-cell transcriptomes to copy number evolutionary trees.

   Python 14 1

6. tumorevo tumorevo Public

   Simulate the evolution and treatment of tumors and generate bulk, single-cell and spatial data from them.

   Jupyter Notebook 7