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@virtualcell Virtual Cell

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    21 repositories

    • vcell

      Public
      Virtual Cell Framework
      simulationinstall4jvcell-clientsvcell-server
      Java
      •
      Other
      •22•90•189•29•Updated Jul 30, 2025Jul 30, 2025

    • vcell-ode

      Public
      The ODE focused solvers VCell utilizes in it's main applications
      C
      •0•0•1•0•Updated Jun 30, 2025Jun 30, 2025

    • openapi-generator

      Public
      OpenAPI Generator allows generation of API client libraries (SDK generation), server stubs, documentation and configuration automatically given an OpenAPI Spec (v2, v3)
      Java
      •
      Apache License 2.0
      •7.1k•0•0•0•Updated May 20, 2025May 20, 2025

    • vcell-fiji

      Public
      A tool that loads VCell simulation results into ImageJ and performs statistical analysis.
      Java
      •
      MIT License
      •1•2•8•0•Updated Apr 23, 2025Apr 23, 2025

    • vcell-fvsolver

      Public
      VCell Finite Volume PDE solver
      C++
      •
      MIT License
      •0•0•1•3•Updated Apr 17, 2025Apr 17, 2025

    • pyvcell

      Public
      Python
      •
      MIT License
      •0•1•0•2•Updated Apr 14, 2025Apr 14, 2025

    • libvcell

      Public
      Java
      •
      MIT License
      •0•1•0•0•Updated Apr 10, 2025Apr 10, 2025

    • CompCellBio

      Public
      HTML
      •1•0•0•0•Updated Mar 26, 2025Mar 26, 2025

    • vcell-jsbml

      Public
      JSBML Fork For VCell
      Java
      •
      GNU Lesser General Public License v2.1
      •26•0•0•0•Updated Mar 25, 2025Mar 25, 2025

    • modelbricks-webapp

      Public
      webapp for exploring public models
      Handlebars
      •7•0•0•2•Updated Feb 7, 2025Feb 7, 2025

    • vcdb

      Public
      Shell
      •
      MIT License
      •0•3•12•0•Updated Jan 30, 2025Jan 30, 2025

    • vcell-solvers

      Public
      Virtual Cell solvers
      virtual-cell-solvers
      C
      •6•6•6•0•Updated Nov 13, 2024Nov 13, 2024

    • vcell-api-client

      Public
      Python client for VCell REST API
      Python
      •
      MIT License
      •0•0•0•0•Updated May 30, 2024May 30, 2024

    • vcell-bioformats

      Public archive
      implementation of ImageDatasetService thrift interface (optionally used by VCell if separately installed)
      Java
      •0•2•0•0•Updated May 6, 2024May 6, 2024

    • usermaterials

      Public
      MIT License
      •0•0•3•0•Updated Sep 13, 2022Sep 13, 2022

    • vcellMichael

      Public archive
      Virtual Cell Framework
      Java
      •
      Other
      •22•0•0•0•Updated Jul 18, 2022Jul 18, 2022

    • vcell_cli_utils

      Public
      Python
      •
      MIT License
      •1•0•0•0•Updated Jun 24, 2021Jun 24, 2021

    • test_suite

      Public archive
      Python
      •
      MIT License
      •0•0•5•0•Updated Mar 15, 2021Mar 15, 2021

    • Biosimulators_utils

      Public archive
      Utilities for building standardized command-line interfaces for biosimulation software packages
      Python
      •
      MIT License
      •6•0•0•0•Updated Jan 27, 2021Jan 27, 2021

    • GoogleSummerOfCode

      Public
      Main documentation site for NRNB GSoC project ideas and resources
      51•0•1•0•Updated Feb 5, 2020Feb 5, 2020

    • vcell-imagej-fret-app

      Public archive
      Virtual Cell integration for ImageJ ** MOVED: https://github.com/virtualcell/vcell
      Java
      •0•2•0•0•Updated Oct 20, 2017Oct 20, 2017