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    35 repositories

    • gopher

      Public
      Gene ontology enrichment analysis using protein expression.
      tool
      Python
      •
      Apache License 2.0
      •1•4•2•0•Updated Jul 31, 2025Jul 31, 2025

    • timsbuktoolkit

      Public
      Rust
      •
      Apache License 2.0
      •0•3•1•5•Updated Jul 29, 2025Jul 29, 2025

    • vizta

      Public
      Plotting themes for Talus Bio
      Python
      •
      Apache License 2.0
      •0•2•1•1•Updated Jun 26, 2025Jun 26, 2025

    • timsquery

      Public archive
      General tools to extract chromatograms from timsTOF data
      tool
      Rust
      •
      Apache License 2.0
      •1•3•4•0•Updated Jun 5, 2025Jun 5, 2025

    • cortado

      Public
      Predict the retention times for missing peptides in an MS run.
      Python
      •
      Apache License 2.0
      •0•1•0•0•Updated Jun 3, 2025Jun 3, 2025

    • talusbio-at-asms

      Public
      A website with all of our ASMS presentations.
      Apache License 2.0
      •0•0•0•0•Updated May 27, 2025May 27, 2025

    • 2024_dev_talus_prospect

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Feb 17, 2025Feb 17, 2025

    • timsseek

      Public
      A peptide-centric search tool for diaPASEF data.
      Rust
      •
      Apache License 2.0
      •0•9•0•0•Updated Dec 11, 2024Dec 11, 2024

    • ionmesh

      Public archive
      tool
      Rust
      •
      Apache License 2.0
      •0•8•1•1•Updated Oct 8, 2024Oct 8, 2024

    • tdf_simulator

      Public
      It simulates tdf files ...
      tool
      Python
      •0•0•0•0•Updated Sep 5, 2024Sep 5, 2024

    • quantms

      Public
      Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Isobaric and DIA-LFQ quantification.
      Nextflow
      •
      MIT License
      •44•0•0•0•Updated Aug 12, 2024Aug 12, 2024

    • petasus

      Public
      Utilties for working with DDA search results from Sage and Comet.
      Python
      •
      Apache License 2.0
      •0•1•2•2•Updated Jul 2, 2024Jul 2, 2024

    • flimsay

      Public
      tool
      Python
      •0•1•0•1•Updated Feb 1, 2024Feb 1, 2024

    • 2023_scispot_utils

      Public
      Common scispot utility functions
      Jupyter Notebook
      •0•0•0•1•Updated Dec 28, 2023Dec 28, 2023

    • cookiecutter-data-science

      Public
      A template for data science projects at Talus Bio
      cookiecuttercookiecutter-datasciencepythondata-science
      Python
      •
      MIT License
      •1•2•1•2•Updated Dec 12, 2023Dec 12, 2023

    • diadem

      Public
      Python
      •
      Apache License 2.0
      •1•8•12•2•Updated Dec 5, 2023Dec 5, 2023

    • nf-encyclopedia

      Public
      A NextFlow pipeline for chromatogram library DIA proteomics workflows
      bioinformaticsnextflowproteomicsdata-independent-acquisitionworkflowpipeline
      Nextflow
      •
      Apache License 2.0
      •4•7•2•3•Updated Dec 4, 2023Dec 4, 2023

    • talus_drc_helper

      Public
      Helps you make dose response curves
      apptool
      Python
      •0•0•3•0•Updated Nov 16, 2023Nov 16, 2023

    • talus_smiles_helper

      Public
      Python
      •0•0•0•0•Updated Jun 1, 2023Jun 1, 2023

    • talus-quarto-theme

      Public
      A Talus-branded Quarto theme
      SCSS
      •
      Apache License 2.0
      •0•0•0•0•Updated Apr 11, 2023Apr 11, 2023

    • cookiecutter-streamlit

      Public
      cookiecutter
      Python
      •
      MIT License
      •0•0•0•14•Updated Mar 1, 2023Mar 1, 2023

    • alphatims

      Public
      An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck Institute of Biochemistry.
      Python
      •
      Apache License 2.0
      •29•0•0•0•Updated Feb 28, 2023Feb 28, 2023

    • talus-aws-utils

      Public
      Talus AWS Utils
      tool
      Python
      •
      MIT License
      •0•0•1•18•Updated Jan 24, 2023Jan 24, 2023

    • talus-utils

      Public archive
      tool
      Python
      •
      MIT License
      •0•0•0•18•Updated Oct 21, 2022Oct 21, 2022

    • talus-standard-report

      Public
      Talus Standard Report to see standard data analyses.
      toolstreamlit
      Python
      •0•0•0•0•Updated Apr 25, 2022Apr 25, 2022

    • talus-dlib-utils

      Public
      How to create Prosit DLIBs for EncyclopeDIA
      Shell
      •0•0•0•0•Updated Mar 28, 2022Mar 28, 2022

    • diatherm

      Public
      Create DIA method files for Thermo instruments from a template method.
      Python
      •
      MIT License
      •0•0•0•0•Updated Feb 4, 2022Feb 4, 2022

    • DIAscope

      Public
      DIAscope is a tool to work with .dia data.
      tool
      Jupyter Notebook
      •0•1•0•0•Updated Feb 4, 2022Feb 4, 2022

    • docker-bioconda-tools

      Public
      A docker image for our commonly used Bioconda packages.
      Dockerfile
      •
      MIT License
      •0•0•0•0•Updated Nov 30, 2021Nov 30, 2021

    • docker-comet

      Public
      A Comet Docker image that is compatible with NextFlow and NextFlow Tower
      dockercontainer
      Shell
      •
      Apache License 2.0
      •0•0•0•0•Updated Nov 12, 2021Nov 12, 2021