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    • Automated LLM evaluation suite for medical tasks
      Python
      2616810Updated Dec 24, 2025Dec 24, 2025
    • Python
      1535154Updated Dec 23, 2025Dec 23, 2025
    • Official codebase for "Brain Harmony: A Multimodal Foundation Model Unifying Morphology and Function into 1D Tokens" (NeruIPS 2025).
      Python
      48000Updated Dec 23, 2025Dec 23, 2025
    • Python
      7194Updated Dec 23, 2025Dec 23, 2025
    • Official codebase for "Brain-JEPA: Brain Dynamics Foundation Model with Gradient Positioning and Spatiotemporal Masking" (NeurIPS 2024, Spotlight).
      Python
      35000Updated Dec 22, 2025Dec 22, 2025
    • fmri-fm

      Public
      MedARC fMRI foundation model
      Jupyter Notebook
      102375Updated Dec 19, 2025Dec 19, 2025
    • Python
      2200Updated Nov 29, 2025Nov 29, 2025
    • eva-probe

      Public
      Evaluation framework for oncology foundation models (FMs)
      Python
      352215Updated Nov 21, 2025Nov 21, 2025
    • Python
      0000Updated Sep 8, 2025Sep 8, 2025
    • Processing post-training datasets for medicine
      2031Updated Sep 3, 2025Sep 3, 2025
    • dinov3

      Public
      MedARC DinoV3
      Jupyter Notebook
      667100Updated Aug 29, 2025Aug 29, 2025
    • Repository for MedARC group tackling Algonauts 2025 challenge
      Jupyter Notebook
      41000Updated Aug 5, 2025Aug 5, 2025
    • MIRAGE

      Public
      Jupyter Notebook
      0560Updated May 28, 2025May 28, 2025
    • MindEyeV2

      Public
      Jupyter Notebook
      34179120Updated May 28, 2025May 28, 2025
    • Python
      0000Updated Jan 5, 2025Jan 5, 2025
    • CLIBP

      Public
      Contrastive Language–Image-Brain Pre-training
      Jupyter Notebook
      0400Updated Aug 17, 2024Aug 17, 2024
    • Using fMRI encoding models to improve image filtering ML approaches
      Jupyter Notebook
      0400Updated Jul 9, 2024Jul 9, 2024
    • mindeye2

      Public
      mindeye v2
      HTML
      4100Updated Jul 7, 2024Jul 7, 2024
    • fMRI-to-image reconstruction on the NSD dataset.
      Jupyter Notebook
      54359230Updated May 22, 2024May 22, 2024
    • datatrove

      Public
      Freeing data processing from scripting madness by providing a set of platform-agnostic customizable pipeline processing blocks.
      Python
      236000Updated Feb 29, 2024Feb 29, 2024
    • A framework for few-shot evaluation of language models.
      Python
      2.9k000Updated Feb 22, 2024Feb 22, 2024
    • Training BioMedical / Clinical LLMs with QLoRA + FSDP
      Jupyter Notebook
      202100Updated Feb 20, 2024Feb 20, 2024
    • Script to detect whether a model was trained on test data
      Python
      0000Updated Feb 7, 2024Feb 7, 2024
    • A framework for few-shot evaluation of autoregressive language models.
      Python
      2.9k100Updated Jan 22, 2024Jan 22, 2024
    • mindeye

      Public
      mindeye
      HTML
      4100Updated Oct 10, 2023Oct 10, 2023
    • Predicting responses in the human brain as participants perceive complex natural visual scenes
      Jupyter Notebook
      4600Updated Jul 15, 2023Jul 15, 2023
    • HTML
      1100Updated May 30, 2023May 30, 2023
    • HTML
      0000Updated May 30, 2023May 30, 2023
    • 0000Updated May 29, 2023May 29, 2023
    • Jupyter Notebook
      2200Updated Feb 8, 2023Feb 8, 2023