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add description to params.cf_chrom_len #733

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Merged
maxulysse merged 2 commits into from
Sep 7, 2022
Merged

add description to params.cf_chrom_len #733

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02227d1
add description to params.cf_chrom_len
maxulysse Sep 7, 2022
e915e40
update CHANGELOG
maxulysse Sep 7, 2022
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3 changes: 2 additions & 1 deletion CHANGELOG.md
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Expand Up @@ -10,7 +10,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
### Added

- [#691](https://github.com/nf-core/sarek/pull/691) - Enable `PROFILE=conda`, `PROFILE=docker` and `PROFILE=singularity` for pytest
- [#716](https://github.com/nf-core/sarek/pull/716) - Add documentation for Azure recomended config vm_size
- [#716](https://github.com/nf-core/sarek/pull/716) - Add documentation for Azure recommended config vm_size

### Changed

Expand All @@ -24,6 +24,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
- [#723](https://github.com/nf-core/sarek/pull/723) - Sync `TEMPLATE` with `tools` `2.5.1`
- [#730](https://github.com/nf-core/sarek/pull/730) - Reduce number of tests
- [#731](https://github.com/nf-core/sarek/pull/731) - Run the somatic test as default on `-profile test_full`, the germline can be tested with `-profile test_full_somatic`
- [#733](https://github.com/nf-core/sarek/pull/733) - Add description for params.cf_chrom_len

### Fixed

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1 change: 1 addition & 0 deletions nextflow_schema.json
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Expand Up @@ -280,6 +280,7 @@
"type": "string",
"default": null,
"fa_icon": "fas fa-ruler-horizontal",
"description": "Specify a custom chromosome length file.",
"help_text": "Control-FREEC requires a file containing all chromosome lenghts. By default the fasta.fai is used. If the fasta.fai file contains chromosomes not present in the intervals, it fails (see: https://github.com/BoevaLab/FREEC/issues/106).\n\nIn this case, a custom chromosome length can be specified. It must be of the same format as the fai, but only contain the relevant chromosomes.\n\n\n\n",
"hidden": true
},
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