Update tools

[maxulysse]

• Update control-freec from 11.4 to 11.5
• Update ensembl-vep from 95.2 to 98.2
• Update freebayes from 1.2.0 to 1.3.1
• Update gatk4 from 4.1.2.0 to 4.1.4.0
• Update manta from 1.5.0 to 1.6.0
• Update qualimap from 2.2.2b to 2.2.2c
• Update tiddit from 2.7.1 to 2.8.0
• Update vcfanno from 0.3.1 to 0.3.2

Many thanks to contributing to nf-core/sarek!

Please fill in the appropriate checklist below (delete whatever is not relevant).
These are the most common things requested on pull requests (PRs).

PR checklist

• This comment contains a description of changes (with reason)
• If you've fixed a bug or added code that should be tested, add tests!
• If necessary, also make a PR on the nf-core/sarek branch on the nf-core/test-datasets repo
• Ensure the test suite passes (nextflow run . -profile test,docker).
• Make sure your code lints (nf-core lint .).
• Documentation in docs is updated
• CHANGELOG.md is updated
• README.md is updated

Learn more about contributing: guidelines