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Pull requests: nf-core/modules

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Pull requests list

Bump cooler/zoomify versions + update tests Ready for Review
#8863 opened Aug 7, 2025 by prototaxites Loading…
2 of 17 tasks
Tidy cooler/cload inputs Ready for Review
#8861 opened Aug 7, 2025 by prototaxites Loading…
3 of 17 tasks
add ktimportkrona module new module Adding a new module Ready for Review
#8859 opened Aug 7, 2025 by paulwolk Loading…
12 of 17 tasks
1
18
New Module: Pharmcat
#8855 opened Aug 6, 2025 by rkmishra3893 Loading…
13 of 14 tasks
Add FASTQ_ALIGN_CONVERT_STAR_SAMTOOLS subworkflow
#8852 opened Aug 5, 2025 by delfiterradas Loading…
14 of 17 tasks
1
@delfiterradas
1
Add new subworkflow: tiff_segmentation_vpt new subworkflow Ready for Review
#8849 opened Aug 5, 2025 by mcmero Loading…
13 of 17 tasks
1
Update scvitools modules
#8844 opened Aug 3, 2025 by nictru • Draft
2
chore(deps): update biocontainers/genomad docker tag to v1.11.1
#8841 opened Aug 1, 2025 by renovate bot Loading…
2 tasks
chore(deps): update biocontainers/eggnog-mapper docker tag to v2.1.13
#8840 opened Aug 1, 2025 by renovate bot Loading…
2 tasks
chore(deps): update biocontainers/cooler docker tag to v0.10.4
#8839 opened Aug 1, 2025 by renovate bot Loading…
2 tasks
add estimatemutationalburden as module
#8837 opened Jul 31, 2025 by famosab Loading…
17 tasks
1
Tidy up MitoHiFi modules
#8836 opened Jul 31, 2025 by prototaxites Loading…
2 of 17 tasks
Add dragen germline module
#8823 opened Jul 29, 2025 by marrip • Draft
7 of 17 tasks
@marrip
9
Modernize arm profiles
#8821 opened Jul 28, 2025 by edmundmiller Loading…
@edmundmiller
Migrate STARFUSION_DETECT local module new module Adding a new module
#8813 opened Jul 24, 2025 by delfiterradas Loading…
10 of 17 tasks
1
@delfiterradas
16
POC: declare ext variable defaults as directives
#8808 opened Jul 24, 2025 by nvnieuwk • Draft
New module: biomformat/convert module new module Adding a new module
#8801 opened Jul 22, 2025 by jcbioinformatics Loading…
14 tasks done
1
92
add viber module new module Adding a new module
#8797 opened Jul 21, 2025 by giorgiagandolfi Loading…
17 tasks
1
Update mobster module update module
#8791 opened Jul 21, 2025 by elena-buscaroli Loading…
4 of 17 tasks
1
6
BUSCO 6 update help wanted Extra attention is needed update module
#8781 opened Jul 16, 2025 by DLBPointon Loading…
4 of 6 tasks
@DLBPointon
8
Add new subworkflow VCF_FILTER_BCFTOOLS_FILTERVEP
#8777 opened Jul 16, 2025 by fellen31 Loading…
17 tasks
Update blastn module
#8765 opened Jul 10, 2025 by AnnaNoren Loading…
3 of 17 tasks
8
Container for FASTQSCREEN_FASTQSCREEN should include bismark
#8758 opened Jul 5, 2025 by fbnrst • Draft
10 of 12 tasks
1
4
New module: bascule
#8751 opened Jul 4, 2025 by elena-buscaroli Loading…
17 tasks
1
11
new module: pvactools/pvacseq
#8748 opened Jul 3, 2025 by KondratievaOlesya • Draft
1 of 17 tasks
1
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