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Pull requests: nf-core/mag

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Pull requests list

Migrate to official nf-core bowtie2 modules + use hostile for host removal
#857 opened Aug 28, 2025 by dialvarezs • Draft
11 tasks
Update more nf-core modules
#856 opened Aug 26, 2025 by dialvarezs Loading…
3 of 11 tasks
1
Add nf-test barebone configs
#855 opened Aug 25, 2025 by dialvarezs Loading…
2 of 11 tasks
Update porechop/abi to patched version to not result in duplicated reads
#854 opened Aug 25, 2025 by jfy133 Loading…
11 tasks
4
Support for running multiple bin QC tools
#842 opened Aug 5, 2025 by harper357 • Draft
2 of 5 tasks
25
Add pydamage results to binqc table
#835 opened Jun 22, 2025 by jfy133 • Draft
11 tasks
1
1
Replace Bowtie2 custom modules with official nf-core ones
#754 opened Jan 24, 2025 by jfy133 • Draft
1 of 15 tasks
5
Use gtdb r220 in full test
#743 opened Jan 9, 2025 by jfy133 • Draft
11 tasks
5
Add support for generating taxprofiler/funcscan input samplesheets for preprocessed FASTQs/FASTAs
#688 opened Oct 10, 2024 by vagkaratzas • Draft
1 of 11 tasks
1
24
Config restructure
#621 opened May 30, 2024 by jfy133 • Draft
5 of 22 tasks
9
Added ability to auto-create samplesheet for nf-core/phageannotator enhancement New feature or request ready to review
#543 opened Nov 20, 2023 by CarsonJM • Draft
7 of 10 tasks
@CarsonJM
32
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