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Pull requests: ksahlin/strobealign

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Pull requests list

Add a "noisy" profile
#577 opened Mar 31, 2026 by marcelm Loading…
1
New pairing of chains for extension mode
#576 opened Mar 31, 2026 by NicolasBuchin Loading…
4
Rename NAM to chain
#575 opened Mar 23, 2026 by marcelm • Draft
1 task
Determine anchor orientation prior to chaining
#574 opened Mar 22, 2026 by Itolstoganov Loading…
2
Attempt to measure runtime quicker
#573 opened Mar 20, 2026 by marcelm • Draft
Perf optimizations
#566 opened Mar 3, 2026 by parlar Loading…
1
Replace the quadratic paired-mapping search with linear-time sweep
#565 opened Feb 27, 2026 by NicolasBuchin • Draft
1 task
11
Non-canonical syncmers
#546 opened Jan 30, 2026 by marcelm • Draft
1
better hamming check using scoring parameters
#518 opened Sep 16, 2025 by NicolasBuchin Loading…
Only keeping strobemer matches with minimum strobes distance difference
#517 opened Sep 13, 2025 by NicolasBuchin Loading…
1
Experiment: Use a bit in RefRandstrobe to indicate whether it is filtered
#466 opened Dec 4, 2024 by marcelm Loading…
3
Use ksw2 to align soft-clipped ends from ungapped alignment
#382 opened Dec 17, 2023 by marcelm Loading…
1
7
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