Golden Helix Workflow Registry

This repository serves as a catalog for workflows, tasks, and applications that can be imported into the Golden Helix server and executed on the workflow and application runtime engine.

Overview

This registry contains a collection of pre-configured workflows and applications designed to work with Golden Helix's genomic analysis platform. These components can be imported into your Golden Helix server to extend its functionality and automate various genomic analysis tasks.

• Workflows: Can be imported via Workflows > Actions > Add Workflow from Repository in the VSWarehouse interface.
• Applications: Can be imported via Applications > Actions > Add Application from Repository in the VSWarehouse interface.

About Golden Helix

Golden Helix provides powerful genomic analysis software solutions, with VarSeq being their flagship product for variant analysis and interpretation. For more information about Golden Helix and their products, visit:

• Golden Helix Website
• VarSeq Product Page

Repository Structure

The repository is organized around two central manifest files that contain metadata for components available through the Golden Helix server:

• workflow-repository.json - Central manifest file containing metadata about available workflows including:

  • Name and description
  • Git repository URL
  • Workflow tags and categories
  • Last updated timestamp
  • Organization and contact information

• application-repository.json - Central manifest file containing metadata about available applications including:

  • Application name and version
  • Description
  • Application YAML configuration URL
  • Icon URL
  • Website URL
  • Application tags
  • Repository metadata (organization, contact)

• Individual workflow repositories referenced in the manifest, each containing:

  • Workflow definition files
  • Documentation
  • Example configurations
  • Test datasets where applicable