Bad level of secondaryFiles in outputs doesn't throw an error

[keiranmraine]

Expected Behavior

When an outputBinding (possibly other areas too) has secondaryFiles defined at the wrong level an error should be thrown.

Actual Behavior

When indented too far secondaryFiles is not interpreted and no validation errors are raised

outputs:
  out_cram:
    type: File
    outputBinding:
      glob: $(inputs.sample).cram
      secondaryFiles:
      - .crai

cwltool happily processes but the .crai file is not captured.

Full Traceback

no error is raised bad config results in stdout of:

{
    "out_bam": {
        "checksum": "sha1$e9e4c479937e797baf0f570b71bff0fd6de71138", 
        "basename": "test.bam", 
        "location": "file:///home/ubuntu/datastore/launcher-4ba554fc-47d6-472d-b1c6-26955e8f600c/outputs/test.bam", 
        "path": "/home/ubuntu/datastore/launcher-4ba554fc-47d6-472d-b1c6-26955e8f600c/outputs/test.bam", 
        "class": "File", 
        "size": 6600410
    }
}

Your Environment

/usr/local/bin/cwltool 1.0.20170828135420