Open
Description
#!/usr/bin/env cwl-runner
cwlVersion: v1.0
class: CommandLineTool
requirements:
InlineJavascriptRequirement: {}
InitialWorkDirRequirement:
listing:
- class: Directory
basename: x
listing:
- class: Directory
basename: y
listing: []
inputs: []
stdout: tree.txt
outputs:
listing: stdout
baseCommand: find
/home/michael/cwltool/env/bin/cwltool 1.0.20171107133715
Resolved 'dir-creation.cwl' to 'file:///home/michael/cwltool/dir-creation.cwl'
Parsed job order from command line: {
"id": "dir-creation.cwl"
}
[job dir-creation.cwl] initializing from file:///home/michael/cwltool/dir-creation.cwl
[job dir-creation.cwl] {}
[job dir-creation.cwl] path mappings is {}
[job dir-creation.cwl] command line bindings is [
{
"position": [
-1000000,
0
],
"datum": "find"
}
]
[job dir-creation.cwl] initial work dir {
"_:bf9f1988-aaf4-444b-a6ca-0d6dd2db21b4": [
"_:bf9f1988-aaf4-444b-a6ca-0d6dd2db21b4",
"/tmp/tmpsyc_95/x",
"Directory",
true
],
"_:89e99889-6ddf-4d19-87d7-8b1535598f8d": [
"_:89e99889-6ddf-4d19-87d7-8b1535598f8d",
"/tmp/tmpsyc_95/x/y",
"Directory",
true
]
}
Got workflow error
Traceback (most recent call last):
File "/home/michael/cwltool/env/local/lib/python2.7/site-packages/cwltool/main.py", line 290, in single_job_executor
r.run(**kwargs)
File "/home/michael/cwltool/env/local/lib/python2.7/site-packages/cwltool/job.py", line 308, in run
relink_initialworkdir(self.generatemapper, self.outdir, self.builder.outdir, inplace_update=self.inplace_update)
File "/home/michael/cwltool/env/local/lib/python2.7/site-packages/cwltool/job.py", line 120, in relink_initialworkdir
os.symlink(vol.resolved, host_outdir_tgt)
OSError: [Errno 2] No such file or directory
Workflow error, try again with --debug for more information:
[Errno 2] No such file or directory
Traceback (most recent call last):
File "/home/michael/cwltool/env/local/lib/python2.7/site-packages/cwltool/main.py", line 917, in main
**vars(args))
File "/home/michael/cwltool/env/local/lib/python2.7/site-packages/cwltool/main.py", line 298, in single_job_executor
raise WorkflowException(Text(e))
WorkflowException: [Errno 2] No such file or directory