Closed
Description
Given this CWL:
class: CommandLineTool
cwlVersion: v1.0
inputs:
pattern:
type: string
inputBinding: {position: 0}
infile:
type: File
inputBinding: {position: 1}
outputs:
outfile:
type: stdout
baseCommand: grep
and this input:
infile: testfile.txt
pattern: Requirement
run with this cwltool:
$ cwltool --version
/usr/local/bin/cwltool 1.0.20161216212910
I get this:
Got workflow error
Traceback (most recent call last):
File "/Library/Python/2.7/site-packages/cwltool/main.py", line 225, in single_job_executor
for r in jobiter:
File "/Library/Python/2.7/site-packages/cwltool/draft2tool.py", line 243, in job
builder = self._init_job(joborder, **kwargs)
File "/Library/Python/2.7/site-packages/cwltool/process.py", line 445, in _init_job
validate.validate_ex(self.names.get_name("input_record_schema", ""), builder.job)
File "/Library/Python/2.7/site-packages/schema_salad/validate.py", line 267, in validate_ex
f.name, indent(str(v)))))
File "/Library/Python/2.7/site-packages/schema_salad/sourceline.py", line 152, in makeError
lead = "%s:%i:%i:" % (self.item.lc.filename,
AttributeError: 'LineCol' object has no attribute 'filename'
the problem is that the file entry should not be specified as a string, it should be specified with the proper class, like this:
infile:
class: File
path: test_file_one.txt
pattern: Requirement
but the error message does not provide very useful guidance on fixing this.
Metadata
Metadata
Assignees
Labels
No labels