feat: use annotation_ingest_id for uniqueness hash key in s3 + db#609
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PALLAVIKHEDLE merged 9 commits intomainfrom Mar 9, 2026
Merged
feat: use annotation_ingest_id for uniqueness hash key in s3 + db#609PALLAVIKHEDLE merged 9 commits intomainfrom
PALLAVIKHEDLE merged 9 commits intomainfrom
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* feat: Add support/config for InstanceSegmentationMask * chore: Add new generated code from the new config for InstanceSegmentationMask * feat: add instance segmentation mask class and instance creation * chore: remove debug/test code in configuration 10441.yaml * feat: remove the instancesegmentation mask from v1, and enhance it for v2 * feat: add first steps for the InstanceSegmentationMask ingestion * fix: remove bad guard and simplify it * feat: add dedicated shape for the InstanceSegmentationMask * fix: remove labels param to convert function of instance seg masks this was causing all data to be one singular label * feat: allow passing seg list into gen and v1 of instance seg mask config * feat: Add configuration generation for InstanceSegmentationMask * feat: Remove mask_label for InstanceSegmentationMask * feat: add label computation and storing before configuration generation * feat: clean schema attribute for the InstanceSegmentationMask * feat: add tests for the instance segmentation mask * chore: Updating schema to add InstanceSegmentationMask * fix: change is_a property of InstanceSegmentationMask in metadata.yaml * chore: update portal-neuroglancer to v1.7.0 * feat: change metadata storing for labels in image-label * feat: add tests for instance segmentation mask db ingestion * feat: add a different method for downscaling multi-label segmentation masks * chore: Add back missing migration script * chore: Update schema to add InstanceSegmentationMask shape * chore: Fix comment and poetry version * feat: change the container for the image-label metadata * chore: apply old formatter for the migration * chore: remove InstanceSegmentationMask from v1 schema * chore: remove lefovers for v1 for InstanceSegmenationMask * chore: add back AnnotationInstanceSegmentationFile in metadata.yaml for v1.1.0 * bugfix a merge conflict * small fixes * fix instance seg mask downsampling; other small fixes; add instancesegmentationmask to ingestion config * add instance segmentation mask validation tests * fix test * chore: Updated [rdev] values.yaml image tags to sha-d8cd1e8 * ingestion fixes * chore: Updated [rdev] values.yaml image tags to sha-03852f4 * add object count to instance seg mask * chore: Updated [rdev] values.yaml image tags to sha-e7e0d72 * add is_valid check to instancesegmask * fix alembic migration versions * reorder migrations correctly. --------- Co-authored-by: aranega <vincent.aranega@gmail.com> Co-authored-by: Sean Martin <martins7@tcd.ie> Co-authored-by: czi-github-helper[bot] <+czi-github-helper[bot]@users.noreply.github.com> Co-authored-by: uermel <uermel@czii.org>
…nt for deposition 10314 (#610) bring config and metadata content back into alignment.
update 'stack' helm chart version Co-authored-by: hspitzley-czi <105455169+hspitzley-czi@users.noreply.github.com>
update 'stack' helm chart version Co-authored-by: hspitzley-czi <105455169+hspitzley-czi@users.noreply.github.com>
…xpected file_size
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This looks good now. Also tested import with this on staging, worked.
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