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Standardization of names in meta.yml for all tools & Big refactoring for all modules to subfolders #551
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Standardization of names in meta.yml for all tools & Big refactoring for all modules to subfolders #551
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472a063
Big refactoring for all modules to subfolders
ypriverol f701378
Merge branch 'dev' of https://github.com/bigbio/quantms into dev
ypriverol 98b2bdd
Big refactoring for all modules to subfolders
ypriverol 8344c2c
standardization of names in meta.yml for all tools.
ypriverol 2693ebb
Fixing references between processes.
ypriverol dd9fa1e
change in other names to follow standard.
ypriverol 87ba131
change in other names to follow standard.
ypriverol ddeb16e
change in other names to follow standard.
ypriverol ae031cd
change in other names to follow standard.
ypriverol dc8c10a
more changes in subworkflows to be consistent
ypriverol 4b25861
update modules path
ypriverol 8474c2f
change search engines from search_engine_{name} to {name}
ypriverol ee198fd
change search engines from search_engine_{name} to {name}
ypriverol 123a9e9
change search engines from search_engine_{name} to {name}
ypriverol f5abec0
change search engines from search_engine_{name} to {name}
ypriverol 2adb3ed
change search engines from search_engine_{name} to {name}
ypriverol b354cba
change search engines from search_engine_{name} to {name}
ypriverol 92ec2d5
change search engines from search_engine_{name} to {name}
ypriverol e8ee7d9
change search engines from search_engine_{name} to {name}
ypriverol 7514b27
change search engines from search_engine_{name} to {name}
ypriverol 1f2d250
change search engines from search_engine_{name} to {name}
ypriverol 098c248
change search engines from search_engine_{name} to {name}
ypriverol 85c734d
change search engines from search_engine_{name} to {name}
ypriverol ec5b2ca
change search engines from search_engine_{name} to {name}
ypriverol 6b6ef6c
change search engines from search_engine_{name} to {name}
ypriverol 5f4ef85
change search engines from search_engine_{name} to {name}
ypriverol cf57a2b
change search engines from search_engine_{name} to {name}
ypriverol 202432d
change search engines from search_engine_{name} to {name}
ypriverol 33fa262
change DIANN modules and subworkflows
ypriverol b9d31c1
remove module not in used.
ypriverol bde0e35
remove module not in used.
ypriverol 23d1531
remove module not in used.
ypriverol 49ba725
remove module not in used.
ypriverol af08b0e
Standardization of names in meta.yml for all tools & Big refactoring …
ypriverol 24a2b06
Merge remote-tracking branch 'origin/dev' into dev
ypriverol facb6aa
SUMMARY_PIPELINE subworkflow added
ypriverol 0b03778
SUMMARY_PIPELINE subworkflow added
ypriverol ef4f3a5
SUMMARY_PIPELINE subworkflow added
ypriverol 4d19300
SUMMARY_PIPELINE subworkflow added
ypriverol 9b80a54
general name change to process name
ypriverol 0bb8ae6
remove extract_psm_features from modules.config
ypriverol 1e33165
remove extract_psm_features from modules.config
ypriverol 658d557
remove extract_psm_features from modules.config
ypriverol 0e70d8a
remove extract_psm_features from modules.config
ypriverol e3b1a71
continue update modules.config
ypriverol 92554d1
continue update modules.config
ypriverol 08fb44c
summary_pipeline -> pmultiqc
ypriverol 36457b5
summary_pipeline -> pmultiqc
ypriverol ef8bbcb
summary_pipeline -> pmultiqc
ypriverol c7d4df5
summary_pipeline -> pmultiqc
ypriverol 97a0584
summary_pipeline -> pmultiqc
ypriverol 4923b34
both msstats -> msstats folder
ypriverol b3bf57a
both msstats -> msstats folder
ypriverol 915cd43
both msstats -> msstats folder
ypriverol de703dd
both msstats -> msstats folder
ypriverol a25ef7b
both msstats -> msstats folder
ypriverol 403dfcc
define a dummy path for all exports
ypriverol 3eb8eb1
define a dummy path for all exports
ypriverol 36a1582
define the output for id workflow
ypriverol 9bea230
changes in the names in meta.yml
ypriverol faecac4
if features enable then, export mzml_statistics
ypriverol 0adc37f
restructure of configs in conf/
ypriverol 5808948
restructure of configs in conf/
ypriverol 5ba2d56
restructure of configs in conf/
ypriverol f0eba27
restructure of configs in conf/
ypriverol c8305ff
1.4.1 -> 1.5.0 because major version
ypriverol f0538a7
first iteration of verbose_modules.config
ypriverol c833bd6
first iteration of verbose_modules.config
ypriverol 4f16130
first iteration of verbose_modules.config
ypriverol bf92003
first iteration of verbose_modules.config
ypriverol 524421f
additional modules added to verbose_modules.config
ypriverol aedcf7b
additional modules added to verbose_modules.config
ypriverol fe20dcd
additional modules added to verbose_modules.config
ypriverol cb8dafb
protein_identification -> peptide_postprocessing
ypriverol a76b2e2
Update conf/modules/modules.config
ypriverol 16bdc54
Documentation of outputs updated.
ypriverol e16fd88
Merge remote-tracking branch 'origin/dev' into dev
ypriverol 0727e82
Documentation of outputs updated.
ypriverol beda47d
Update docs/output.md
ypriverol a929a7c
Update docs/output.md
ypriverol 0b00e37
Update docs/output.md
ypriverol e68381c
Documentation of outputs updated.
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