Remove check, --explain, --clean, --generate-shell-completion aliases

[MichaReiser]

Summary

This PR changes ruff <path>, ruff --explain, ruff --clean and ruff --generate-shell-completion to error but continues to print an error message. The commands were deprecated in #10169 (v0.3.0)

Part of #10171

Test Plan

I verified that:

• The JetBrains extension uses ruff check
• The LSP uses ruff check
• python-lsp-ruff I think it uses ruff check

[github-actions]

ruff-ecosystem results

Linter (stable)

✅ ecosystem check detected no linter changes.

Linter (preview)

✅ ecosystem check detected no linter changes.

[dhruvmanila]

I'm looking at the Neovim ecosystem, already completed in conform.nvim: stevearc/conform.nvim#348

[MichaReiser]

I changed the implementation to error instead of removing the aliases entirely.