Multiple patient TSV

[maxulysse]

• Removed cross patient somatic calls when using multiple patient TSV file
• VCFs and Annotated VCFs are now ordered by Patient, then tools
• Strelka Best Practices output is now prefixed with StrelkaBP_
• Improved usage of targetBED params
• Fix issue with annotation that was consuming cache channels

PR checklist

• PR is made against dev branch
• This comment contains a description of changes (with reason)
• If you've fixed a bug or added code that should be tested, add tests!
• Ensure the test suite passes (./scripts/test.sh -p docker -t ALL).
• Documentation in docs is updated
• CHANGELOG.md is updated

[apeltzer]

Nice - also love the code cleanup :-)

[maxulysse]

When we switched to GATK4 parts of code stayed untouched, so every now and then I encounter some stuff that was hidden, and it feels so good to delete all that...

[maxulysse]

@KochTobi I think I fixed the issue.
Congrats to @alneberg to found out what was causing it.

[szilvajuhos]

OK