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Add /scratch in containers#477
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maxulysse merged 13 commits intoSciLifeLab:masterfrom Oct 6, 2017
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Fix issues:
And a fews improvements on the containers:
runascatandrunconvertallelecountsare now replaced byr-basewillmclaren/ensembl-vep:release_90.5is now base forvepgrch37andvepgrch38vepis removedstrelka_config.inithat is not used anymore