Make improvements #66
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| name: Build GPEC | |
| on: | |
| workflow_dispatch: | |
| pull_request: | |
| branches: [develop] | |
| jobs: | |
| build-netcdf-gfortran: | |
| runs-on: ubuntu-latest | |
| env: | |
| PREFIX: ${{ github.workspace }}/deps | |
| FC: gfortran | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Restore NetCDF-gfortran cache | |
| id: netcdf-cache | |
| uses: actions/cache@v4 | |
| with: | |
| path: ${{ env.PREFIX }} | |
| key: ${{ runner.os }}-netcdf-gfortran-v1 | |
| - name: Install dependencies | |
| if: steps.netcdf-cache.outputs.cache-hit != 'true' | |
| run: | | |
| sudo rm /var/lib/man-db/auto-update | |
| sudo apt update | |
| sudo apt install -y build-essential gfortran m4 curl libhdf5-dev libnetcdf-dev | |
| - name: Build NetCDF-Fortran 4.6.1 | |
| if: steps.netcdf-cache.outputs.cache-hit != 'true' | |
| run: | | |
| mkdir -p $PREFIX/src | |
| cd $PREFIX/src | |
| curl -L -o netcdf-fortran.tar.gz https://github.com/Unidata/netcdf-fortran/archive/refs/tags/v4.6.1.tar.gz | |
| tar xf netcdf-fortran.tar.gz | |
| cd netcdf-fortran-4.6.1 | |
| export CPPFLAGS="-I/usr/include/hdf5/serial" | |
| export LDFLAGS="-L/usr/lib/x86_64-linux-gnu/hdf5/serial" | |
| export LIBS="-lnetcdf -lhdf5 -lhdf5_hl -lm -lz" | |
| echo "::group::Configure log" | |
| ./configure --prefix=$PREFIX --enable-shared --disable-static || (cat config.log && exit 1) | |
| echo "::endgroup::" | |
| make -j$(nproc) | |
| make check | |
| make install | |
| - name: Confirm cache result | |
| run: | | |
| if [ "${{ steps.netcdf-cache.outputs.cache-hit }}" = "true" ]; then | |
| echo "Cache found. Skipping build." | |
| else | |
| echo "Cache not found. Built from source." | |
| fi | |
| - name: Confirm all shared libs | |
| run: | | |
| ls -lh $PREFIX/lib | |
| ls -lh $PREFIX/include | |
| build-netcdf-ifort: | |
| runs-on: ubuntu-latest | |
| env: | |
| PREFIX: ${{ github.workspace }}/deps | |
| ONEAPI_ROOT: /opt/intel/oneapi | |
| FC: ifort | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Try restore NetCDF-ifort cache | |
| id: netcdf-cache | |
| uses: actions/cache@v4 | |
| with: | |
| path: ${{ env.PREFIX }} | |
| key: ${{ runner.os }}-netcdf-ifort-v1 | |
| - name: Install Intel oneAPI + deps | |
| if: steps.netcdf-cache.outputs.cache-hit != 'true' | |
| run: | | |
| sudo rm /var/lib/man-db/auto-update | |
| wget -O- https://apt.repos.intel.com/intel-gpg-keys/GPG-PUB-KEY-INTEL-SW-PRODUCTS.PUB | gpg --dearmor | sudo tee /usr/share/keyrings/oneapi-archive-keyring.gpg > /dev/null | |
| echo "deb [signed-by=/usr/share/keyrings/oneapi-archive-keyring.gpg] https://apt.repos.intel.com/oneapi all main" | sudo tee /etc/apt/sources.list.d/oneAPI.list | |
| sudo apt update | |
| sudo apt install -y curl gnupg lsb-release build-essential m4 curl libhdf5-dev libnetcdf-dev | |
| sudo apt install -y intel-oneapi-compiler-fortran-2022.2.1 | |
| - name: Source oneAPI and check ifort | |
| if: steps.netcdf-cache.outputs.cache-hit != 'true' | |
| shell: bash | |
| run: | | |
| source /opt/intel/oneapi/setvars.sh | |
| echo "Which ifort: $(which ifort)" | |
| ifort --version | |
| - name: Build NetCDF-Fortran 4.6.1 with ifort | |
| if: steps.netcdf-cache.outputs.cache-hit != 'true' | |
| run: | | |
| source /opt/intel/oneapi/setvars.sh | |
| mkdir -p $PREFIX/src | |
| cd $PREFIX/src | |
| curl -L -o netcdf-fortran.tar.gz https://github.com/Unidata/netcdf-fortran/archive/refs/tags/v4.6.1.tar.gz | |
| tar xf netcdf-fortran.tar.gz | |
| cd netcdf-fortran-4.6.1 | |
| export CPPFLAGS="-I/usr/include -I/usr/include/hdf5/serial" | |
| export LDFLAGS="-L/usr/lib -L/usr/lib/x86_64-linux-gnu/hdf5/serial" | |
| export LIBS="-lnetcdf -lhdf5 -lhdf5_hl -lm -lz" | |
| echo "::group::Configure log" | |
| ./configure --prefix=$PREFIX --enable-shared --disable-static || (cat config.log && exit 1) | |
| echo "::endgroup::" | |
| make -j$(nproc) | |
| make check | |
| make install | |
| - name: Confirm cache result | |
| run: | | |
| if [ "${{ steps.netcdf-cache.outputs.cache-hit }}" = "true" ]; then | |
| echo "Cache found. Skipping build." | |
| else | |
| echo "Cache not found. Built from source." | |
| fi | |
| - name: Confirm all shared libs | |
| run: | | |
| ls -lh $PREFIX/lib | |
| ls -lh $PREFIX/include | |
| make_gpec_gfortran: | |
| runs-on: ubuntu-latest | |
| needs: build-netcdf-gfortran | |
| env: | |
| PREFIX: ${{ github.workspace }}/deps | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Restore NetCDF-gfortran cache | |
| uses: actions/cache@v4 | |
| with: | |
| path: ${{ env.PREFIX }} | |
| key: ${{ runner.os }}-netcdf-gfortran-v1 | |
| - name: Rewrite .gitmodules to use HTTPS | |
| run: | | |
| git config --file .gitmodules submodule.harvest.url https://github.com/gafusion/harvest_client.git | |
| git submodule sync | |
| git submodule update --init --recursive | |
| - name: Install Dependencies | |
| run: | | |
| sudo rm /var/lib/man-db/auto-update | |
| sudo apt update | |
| sudo apt install -y gfortran libopenblas-dev libx11-dev libnetcdf-dev | |
| - name: Compile | |
| run: | | |
| cd install | |
| export NETCDF_C_HOME=/usr | |
| export NETCDF_FORTRAN_HOME=$PREFIX | |
| export LAPACKHOME=/usr | |
| export FC=/usr/bin/gfortran | |
| export CC=/usr/bin/gcc | |
| export FFLAGS='-fallow-argument-mismatch -O0 -Wall -Wextra -fcheck=all,no-array-temps -fbacktrace -finit-real=snan -finit-integer=-9999 -fstack-protector-all -fsanitize=bounds -Wno-array-temporaries -Wno-unused-variable -Wno-unused-dummy-argument -Wno-compare-reals -Wno-unused-parameter -Wno-unused-label -fno-omit-frame-pointer -frecord-marker=4 -gdwarf-4 -ffloat-store -fbounds-check' | |
| make -j$(nproc) | |
| - name: Run Soloviev ideal example | |
| run: | | |
| export GPECHOME=$(pwd) | |
| export LD_LIBRARY_PATH=$PREFIX/lib:$LD_LIBRARY_PATH | |
| cd docs/examples/regression_solovev_ideal_example | |
| ulimit -s unlimited | |
| ../../../bin/dcon && ../../../bin/gpec && ../../../bin/stride && ../../../bin/pentrc | |
| - name: Run Soloviev kinetic example | |
| run: | | |
| export GPECHOME=$(pwd) | |
| export LD_LIBRARY_PATH=$PREFIX/lib:$LD_LIBRARY_PATH | |
| cd docs/examples/regression_solovev_kinetic_example | |
| ulimit -s unlimited | |
| ../../../bin/dcon && ../../../bin/gpec && ../../../bin/pentrc | |
| - name: Run Soloviev resistive example | |
| run: | | |
| export GPECHOME=$(pwd) | |
| export LD_LIBRARY_PATH=$PREFIX/lib:$LD_LIBRARY_PATH | |
| cd docs/examples/regression_solovev_resistive_example | |
| ulimit -s unlimited | |
| ../../../bin/rdcon && ../../../bin/rmatch && ../../../bin/gpec && ../../../bin/stride | |
| make_gpec_ifort: | |
| runs-on: ubuntu-latest | |
| needs: build-netcdf-ifort | |
| env: | |
| PREFIX: ${{ github.workspace }}/deps | |
| ONEAPI_ROOT: /opt/intel/oneapi | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Restore NetCDF-ifort cache | |
| uses: actions/cache@v4 | |
| with: | |
| path: ${{ env.PREFIX }} | |
| key: ${{ runner.os }}-netcdf-ifort-v1 | |
| - name: Install Intel oneAPI + deps | |
| run: | | |
| sudo rm /var/lib/man-db/auto-update | |
| wget -O- https://apt.repos.intel.com/intel-gpg-keys/GPG-PUB-KEY-INTEL-SW-PRODUCTS.PUB | gpg --dearmor | sudo tee /usr/share/keyrings/oneapi-archive-keyring.gpg > /dev/null | |
| echo "deb [signed-by=/usr/share/keyrings/oneapi-archive-keyring.gpg] https://apt.repos.intel.com/oneapi all main" | sudo tee /etc/apt/sources.list.d/oneAPI.list | |
| sudo apt update | |
| sudo apt install -y curl gnupg lsb-release build-essential m4 curl libhdf5-dev libnetcdf-dev | |
| sudo apt install -y intel-oneapi-compiler-fortran-2022.2.1 intel-oneapi-mkl-2022.2.1 libx11-dev libnetcdf-dev | |
| - name: Source oneAPI and check ifort and icx | |
| shell: bash | |
| run: | | |
| source /opt/intel/oneapi/setvars.sh | |
| echo "Which ifort: $(which ifort)" | |
| ifort --version | |
| - name: Rewrite .gitmodules to use HTTPS | |
| run: | | |
| git config --file .gitmodules submodule.harvest.url https://github.com/gafusion/harvest_client.git | |
| git submodule sync | |
| git submodule update --init --recursive | |
| - name: Compile | |
| run: | | |
| source /opt/intel/oneapi/setvars.sh | |
| cd install | |
| export NETCDF_C_HOME=/usr | |
| export NETCDF_FORTRAN_HOME=$PREFIX | |
| export MKLROOT=/opt/intel/oneapi/mkl/2022.2.1 | |
| export FC=/opt/intel/oneapi/compiler/2022.2.1/linux/bin/intel64/ifort | |
| export CC=/usr/bin/gcc | |
| export FFLAGS='-O0 -warn all -check all -check noarg_temp_created -traceback -fpe3 -fstack-protector -fopenmp' | |
| make -j$(nproc) | |
| - name: Run Soloviev ideal example | |
| run: | | |
| source /opt/intel/oneapi/setvars.sh | |
| export GPECHOME=$(pwd) | |
| export LD_LIBRARY_PATH=$PREFIX/lib:$LD_LIBRARY_PATH | |
| export FOR_DISABLE_STACK_TRACE=TRUE | |
| cd docs/examples/regression_solovev_ideal_example | |
| ulimit -s unlimited | |
| ../../../bin/dcon && ../../../bin/gpec && ../../../bin/stride && ../../../bin/pentrc | |
| - name: Run Soloviev kinetic example | |
| run: | | |
| source /opt/intel/oneapi/setvars.sh | |
| export GPECHOME=$(pwd) | |
| export LD_LIBRARY_PATH=$PREFIX/lib:$LD_LIBRARY_PATH | |
| export FOR_DISABLE_STACK_TRACE=TRUE | |
| cd docs/examples/regression_solovev_kinetic_example | |
| ulimit -s unlimited | |
| ../../../bin/dcon && ../../../bin/gpec && ../../../bin/pentrc | |
| - name: Run Soloviev resistive example | |
| run: | | |
| source /opt/intel/oneapi/setvars.sh | |
| export GPECHOME=$(pwd) | |
| export LD_LIBRARY_PATH=$PREFIX/lib:$LD_LIBRARY_PATH | |
| export FOR_DISABLE_STACK_TRACE=TRUE | |
| cd docs/examples/regression_solovev_resistive_example | |
| ulimit -s unlimited | |
| ../../../bin/rdcon && ../../../bin/rmatch && ../../../bin/gpec && ../../../bin/stride |