prepInputs failures when extracting archives

[achubaty]

@ianmseddy I'm still seeing failures with the new NTEMS LCC fun, e.g.,

Browse[1]> LCC_lrg <- Cache(LandR::prepInputs_NTEMS_LCC_FAO,
+                    year = 2010,
+                    cropTo = sim$rasterToMatchLarge,
+                    maskTo = sim$studyAreaLarge,
+                    projectTo = sim$rasterToMatchLarge,
+                    destinationPath = mod$dPath)
Jan17 16:25:32 BC_HRV_preamble      :init temporarily setting reproducible.usegdalwarp to FALSE to avoid error
Jan17 16:25:32 BC_HRV_preamble      :init Running `prepInputs`
Jan17 16:25:32 BC_HRV_preamble      :init Running `preProcess`
Jan17 16:25:33 BC_HRV_preamble      :init Preparing: CA_forest_VLCE2_2010.tif
Jan17 16:25:33 BC_HRV_preamble      :init alsoExtract is unspecified; assuming that all files must be extracted
Jan17 16:25:33 BC_HRV_preamble      :init Checksumming all files in archive
Jan17 16:25:33 BC_HRV_preamble      :init From:
Jan17 16:25:33 BC_HRV_preamble      :init /mnt/projects/HRV/BC_HRV/inputs/CA_forest_VLCE2_2010.zip  
Jan17 16:25:33 BC_HRV_preamble      :init Extracting
Jan17 16:25:33 BC_HRV_preamble      :init files
Jan17 16:25:33 BC_HRV_preamble      :init                                <char>
Jan17 16:25:33 BC_HRV_preamble      :init  1:          CA_forest_VLCE2_2010.lyr
Jan17 16:25:33 BC_HRV_preamble      :init  2:          CA_forest_VLCE2_2010.tfw
Jan17 16:25:33 BC_HRV_preamble      :init  3:          CA_forest_VLCE2_2010.tif
Jan17 16:25:33 BC_HRV_preamble      :init  4:      CA_forest_VLCE2_2010.tif.ovr
Jan17 16:25:33 BC_HRV_preamble      :init  5:  CA_forest_VLCE2_2010.tif.vat.cpg
Jan17 16:25:33 BC_HRV_preamble      :init  6:  CA_forest_VLCE2_2010.tif.vat.dbf
Jan17 16:25:33 BC_HRV_preamble      :init  7: CA_forest_VLCE2_2010_LISEZMOI.txt
Jan17 16:25:33 BC_HRV_preamble      :init  8:   CA_forest_VLCE2_2010_README.txt
Error in file(file, ifelse(append, "a", "w")) : 
  cannot open the connection

[achubaty]

appears to be a problem extracting the zip files, so attributing this to reproducible

[achubaty]

from Sourav, trying to extract climate layers in canClimateData:

4: cannot open file '/home/sdas/SpaDES_book/LandRDemo_coreVeg/inputs/climate/historical/28//home/sdas/SpaDES_book/LandRDemo_coreVeg/inputs/28_MSY_1990.zip': No such file or directory

note the path construction failure

> packageVersion("reproducible")
[1] ‘2.1.2.9062’

[achubaty]

also:

Browse[1]>   LCClarge <- LandR::prepInputs_SCANFI_LCC_FAO(
+     year = 2010,
+     destinationPath = mod$dPath,
+     cropTo = sim$studyAreaLarge,
+     maskTo = sim$studyAreaLarge
+   )
Sep17 20:30:20 LandWeb_preamble     :init Running `prepInputs`
Sep17 20:30:20 LandWeb_preamble     :init Running `preProcess`
Sep17 20:30:20 LandWeb_preamble     :init alsoExtract is unspecified; assuming that all files must be extracted
Sep17 20:30:20 LandWeb_preamble     :init No targetFile supplied. Checksumming all files in archive
Sep17 20:30:31 LandWeb_preamble     :init From:
Sep17 20:30:31 LandWeb_preamble     :init /mnt/projects/HRV/LandWeb/inputs/CA_FAO_forest_2019.zip  
Sep17 20:30:31 LandWeb_preamble     :init Extracting
Sep17 20:30:31 LandWeb_preamble     :init files
Sep17 20:30:31 LandWeb_preamble     :init                                                  <char>
Sep17 20:30:31 LandWeb_preamble     :init   1:          CA_FAO_forest_2019/CA_FAO_forest_2019.tfw
Sep17 20:30:31 LandWeb_preamble     :init   2:          CA_FAO_forest_2019/CA_FAO_forest_2019.tif
Sep17 20:30:31 LandWeb_preamble     :init   3:  CA_FAO_forest_2019/CA_FAO_forest_2019.tif.aux.xml
Sep17 20:30:31 LandWeb_preamble     :init   4:      CA_FAO_forest_2019/CA_FAO_forest_2019.tif.lyr
Sep17 20:30:31 LandWeb_preamble     :init   5:     CA_FAO_forest_2019/CA_FAO_forest_2019.tif.lyrx
Sep17 20:30:31 LandWeb_preamble     :init   6:      CA_FAO_forest_2019/CA_FAO_forest_2019.tif.ovr
Sep17 20:30:31 LandWeb_preamble     :init   7:  CA_FAO_forest_2019/CA_FAO_forest_2019.tif.vat.cpg
Sep17 20:30:31 LandWeb_preamble     :init   8:  CA_FAO_forest_2019/CA_FAO_forest_2019.tif.vat.dbf
Sep17 20:30:31 LandWeb_preamble     :init   9:      CA_FAO_forest_2019/CA_FAO_forest_2019.tif.xml
Sep17 20:30:31 LandWeb_preamble     :init  10: CA_FAO_forest_2019/CA_FAO_forest_2019_LISEZMOI.txt
Sep17 20:30:31 LandWeb_preamble     :init  11:   CA_FAO_forest_2019/CA_FAO_forest_2019_README.txt
Error in file(file, ifelse(append, "a", "w")) : 
  cannot open the connection

[achubaty]

workaround: manually unzipping the archive and rerunning the code that calls prepInputs

[eliotmcintire]

We don't have a reprex yet?

[achubaty]

posted previously on zulip - Sourav's earlier today

[eliotmcintire]

Is there a way to get a reprex here? I believe this is fixed in reproducible 3.0.0, but we need to test.