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ed2in[["FFILOUT"]] <- file.path(normalizePath(output_dir), "analysis") |
This line results in a warning that the directory on the HPC doesn't exist, even when it does. I think that was leading me to believe that run.write.configs() was trying to write to the HPC, but it's not.
I think this warning could (and should) be suppressed by changing to normalizePath(output_dir, mustwork = FALSE). Probably all the normalizePath() calls in this function should get mustwork = FALSE
Originally posted by @Aariq in #2992 (comment)