Merge Upstream to Ouranosinc/master #2
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* fixed typo * added test for saving opened zarr dataset * modified test for saving opened zarr dataset * allow different last chunk * removed whitespace * modified error messages * fixed pep8 issues * updated whats-new
* Start deprecating inplace. * remove warnings from tests. * this commit silences nearly all warnings. * Add whats-new. * Add a default kwarg to _check_inplace and use for Dataset.update. * Major fix! * Add stacklevel * Tests: Less aggressive warning filter + fix unnecessary inplace. * revert changes to _calculate_binary_op
This has been deprecated since xarray 0.10.
I also added support for passing a mapping ``{dim: freq}`` as the first
argument.
* putting up for discussion: stop loading tutorial data by default * add tutorial.open_dataset * fix typo * add test for cached tutoreial data and minor doc fixes
…2555) * Add libnetcdf, libhdf5, pydap and cfgrib to xarray.show_versions() * More fixup * Show full Python version string
Add missing , and article in error message when attribute values have the wrong type.
This makes string indexing usable in a pandas.MultiIndex.
* DOC: remove example using Dataset.T * Update reshaping.rst * Update reshaping.rst
* Fix multidimensional co-ordinate example. * Use open_dataset().load() in other example
* wip: getting started * preliminary support for zarr consolidated metadata * update zarr dev repo * add consolidate to close * doc updates * skip tests based on zarr version * fix doc typos * fix PEP8 issues * fix test skipping * fixed integration test * update version check * rename keyword arg * Update whats-new.rst * instructions for consolidating existing stores
This version should be a little less noisy, since instructions only for authors are put in commented out HTML.
* Fix h5netcdf saving scalars with filters or chunks * Revert adding scalar dataset to central test function * Add fix description to what's new.
* Add keep_attrs to binary_op * added test for binary_ops keep_attrs=True * PEP8 issues + blank lines removed * whitespace removed * keep_attrs in DataArray * enhancement * simpler testing
* Support HighLevelGraphs Fixes #4291 * test __dask_layers__ * Skip dependnecies test with old dask * Reenable dask-dev test on Travis-CI
* concatenates along a single dimension * Wrote function to find correct tile_IDs from nested list of datasets * Wrote function to check that combined_tile_ids structure is valid * Added test of 2d-concatenation * Tests now check that dataset ordering is correct * Test concatentation along a new dimension * Started generalising auto_combine to N-D by integrating the N-D concatentation algorithm * All unit tests now passing * Fixed a failing test which I didn't notice because I don't have pseudoNetCDF * Began updating open_mfdataset to handle N-D input * Refactored to remove duplicate logic in open_mfdataset & auto_combine * Implemented Shoyers suggestion in #2553 to rewrite the recursive nested list traverser as an iterator * --amend * Now raises ValueError if input not ordered correctly before concatenation * Added some more prototype tests defining desired behaviour more clearly * Now raises informative errors on invalid forms of input * Refactoring to alos merge along each dimension * Refactored to literally just apply the old auto_combine along each dimension * Added unit tests for open_mfdatset * Removed TODOs * Removed format strings * test_get_new_tile_ids now doesn't assume dicts are ordered * Fixed failing tests on python3.5 caused by accidentally assuming dict was ordered * Test for getting new tile id * Fixed itertoolz import so that it's compatible with older versions * Increased test coverage * Added toolz as an explicit dependency to pass tests on python2.7 * Updated 'what's new' * No longer attempts to shortcut all concatenation at once if concat_dims=None * Rewrote using itertools.groupby instead of toolz.itertoolz.groupby to remove hidden dependency on toolz * Fixed erroneous removal of utils import * Updated docstrings to include an example of multidimensional concatenation * Clarified auto_combine docstring for N-D behaviour * Added unit test for nested list of Datasets with different variables * Minor spelling and pep8 fixes * Reverted API so that N-D generalisation is hidden * Removed infer_order_from_coords argument
* Fix parsing '_Unsigned' attribute Fixes #2583 * Fix encode step too. * Add tests. * Fix whats-new. * Undo unnecessary change * Yay! fix test failure.
* doc fixes Fixes #2610 * minor doc fixes. * Fix examples path for open statements.
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