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Deep-Atlas/pipeline/gene_to_nissl.py
Lines 115 to 119 in 1add677
| logger.warn( | |
| f"One of the gene slice has a section number ({section_number})" | |
| f"out of nissl volume shape {nissl_volume.shape}. This slice is" | |
| "removed from the pipeline." | |
| ) |
We should add extra spaces. I got this in the standard output
WARNING - gene-to-nissl - One of the gene slice has a section number (531.0)out of nissl volume shape (528, 320, 456). This slice isremoved from the pipeline.
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