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    33 repositories

    • pyoperant

      Public
      python package for operant conditioning
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •15•14•25•3•Updated Apr 13, 2026Apr 13, 2026

    • behav-analysis

      Public
      Scripts and utilities for processing behavior data from pyoperant
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •3•2•1•1•Updated Feb 28, 2023Feb 28, 2023

    • glab_oe_rig_tools

      Public
      Tools for new open ephys electrophysiology rigs
      Python
      •
      GNU General Public License v3.0
      •3•0•0•0•Updated Apr 6, 2022Apr 6, 2022

    • glab-common-py

      Public
      common python code for gentnerlab
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •3•2•0•0•Updated Oct 22, 2021Oct 22, 2021

    • ephys-analysis

      Public
      Scripts and utilities for processing electrophysiology data
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •9•11•6•0•Updated Jul 21, 2020Jul 21, 2020

    • scrumlord

      Public
      Continuous administration of the Greene Lab's electronic scrum
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •10•0•0•0•Updated May 21, 2020May 21, 2020

    • plugin-GUI

      Public
      Open Ephys GUI with plugin architecture
      C++
      •703•0•0•0•Updated Mar 3, 2020Mar 3, 2020

    • ZMQPlugins

      Public
      Open Ephys GUI plugin for networking using the ZMQ library
      C++
      •10•0•0•0•Updated Feb 25, 2020Feb 25, 2020

    • rpioperantctl

      Public
      A simple python script for managing processes on remote RPis in python via ssh. Will likely be replaced with zmq soon.
      Python
      •0•0•0•0•Updated Feb 4, 2020Feb 4, 2020

    • pyoperant_example_bird

      Public
      An example bird folder for pyoperant
      0•0•0•0•Updated Apr 9, 2019Apr 9, 2019

    • klusta-pipeline

      Public
      data pipeline for analyzing spike2 collected data in klustakwik
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •7•4•5•4•Updated Nov 29, 2018Nov 29, 2018

    • glab-common-mat

      Public
      common scripts for common tasks
      MATLAB
      •
      BSD 3-Clause "New" or "Revised" License
      •1•0•0•1•Updated Nov 14, 2018Nov 14, 2018

    • KiloSort

      Public
      GPU code for spike sorting
      MATLAB
      •
      GNU General Public License v2.0
      •101•0•0•0•Updated Oct 26, 2017Oct 26, 2017

    • archivetools

      Public
      Scripts and functions to archive and keep track of data
      Python
      •
      GNU Lesser General Public License v3.0
      •1•0•0•0•Updated Sep 29, 2017Sep 29, 2017

    • airflow

      Public
      Airflow is a system to programmatically author, schedule and monitor data pipelines.
      Python
      •
      Other
      •17k•0•0•0•Updated Apr 8, 2016Apr 8, 2016

    • gentnerlab.github.io

      Public
      CSS
      •1•0•0•0•Updated Mar 5, 2016Mar 5, 2016

    • isotools

      Public
      command-line tools for calculating cluster quality
      C++
      •0•1•0•0•Updated Feb 23, 2016Feb 23, 2016

    • probe-the-broab

      Public
      scripts used for experiment control
      PLSQL
      •0•0•10•0•Updated Jan 14, 2016Jan 14, 2016

    • spikedetekt2

      Public
      Python
      •8•0•0•0•Updated Nov 25, 2014Nov 25, 2014

    • klustaviewa

      Public
      GUI for spike sorting manual stage in Python
      Python
      •
      Other
      •17•0•0•0•Updated Nov 11, 2014Nov 11, 2014

    • klustakwik

      Public
      Fast software for high-dimensional cluster analysis using the masked EM algorithm for Gaussians mixtures. (Can also be used in "classical" mode for standard har…
      C++
      •23•0•0•0•Updated Nov 7, 2014Nov 7, 2014

    • sturnus

      Public
      django database & website for experiment data
      Python
      •1•5•9•0•Updated Oct 9, 2014Oct 9, 2014

    • s2-acute

      Public
      old recording scripts
      0•0•0•0•Updated Aug 5, 2014Aug 5, 2014

    • operant_c

      Public
      operant scripts
      C
      •0•0•0•0•Updated Apr 17, 2014Apr 17, 2014

    • pys2talker

      Public
      core functions and classes for building a Spike2 Talker in Python
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Jan 23, 2014Jan 23, 2014

    • demixed-PCA

      Public
      Python implementation of Brendel, Romo, & Machens' Demixed Principal Component Analysis
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•5•0•0•Updated Jan 22, 2014Jan 22, 2014

    • PyDAQmx

      Public
      Interface to National Instrument NIDAQmx driver
      Python
      •57•0•0•0•Updated Jan 15, 2014Jan 15, 2014

    • ipydra

      Public
      Web interface for spawning IPython Notebook servers.
      CSS
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Oct 28, 2013Oct 28, 2013

    • django-broab

      Public
      Django package that implements the Python-Neo data model for electrophysiology
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•0•6•0•Updated Oct 4, 2013Oct 4, 2013

    • manage_behavior

      Public
      scripts to manage behavior
      Perl
      •0•0•0•0•Updated Jun 27, 2013Jun 27, 2013
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