quantms/modules/local/utils/extract_psm/meta.yml at 8344c2c229d831dab8a8f99a11e2b6a62efc2f6b · ypriverol/quantms · GitHub

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name: PSMCONVERSION
description: A module to extract PSM information from idXML file
keywords:
  - PSM
  - conversion
tools:
  - custom:
      description: |
        A custom module for PSM extraction.
      homepage: https://github.com/bigbio/quantms
      documentation: https://github.com/bigbio/quantms/tree/readthedocs
input:
  - idxml_file:
      type: file
      description: idXML identification file
      pattern: "*.idXML"
  - spectrum_df:
      type: file
      description: spectrum data file
      pattern: "_spectrum_df.parquet"
  - meta:
      type: map
      description: Groovy Map containing sample information
output:
  - psm_info:
      type: file
      description: PSM parquet file
      pattern: "*_psm.parquet"
  - version:
      type: file
      description: File containing software version
      pattern: "versions.yml"
authors:
  - "@daichengxin"