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added get/set methods for header from file pointer Windows/MinGW-W64 CI #375: Commit 86f0c83 pushed by whitwham
5m 59s develop
develop
5m 59s
removed direct header access through file, to use user read header Windows/MinGW-W64 CI #374: Commit b08fcbf pushed by jkbonfield
5m 52s develop
develop
5m 52s
Fix embed_ref=2 on SEQ * and MD:Z tag. Windows/MinGW-W64 CI #373: Commit 8aebcad pushed by daviesrob
5m 44s develop
develop
5m 44s
Add UMI support to FASTQ input/output. (#1960) Windows/MinGW-W64 CI #372: Commit 0c1159f pushed by vasudeva8
5m 46s develop
develop
5m 46s
Merge converting bcf 1st phase data as in v4.4 (PR #1938) Windows/MinGW-W64 CI #371: Commit 4838906 pushed by daviesrob
5m 31s develop
develop
5m 31s
Check for __builtin_cpu_supports("ssse3") in make-only builds Windows/MinGW-W64 CI #360: Commit 1e3cef4 pushed by jkbonfield
5m 25s develop
develop
5m 25s
Rewrite to avoid undefined NULL+0 pointer arithmetic (#1962) Windows/MinGW-W64 CI #359: Commit aaa4784 pushed by vasudeva8
5m 18s develop
develop
5m 18s
Switch from strtol to hts_str2uint in mod parsing (#1957) Windows/MinGW-W64 CI #354: Commit 72422ef pushed by jkbonfield
6m 0s develop
develop
6m 0s
Added support information (PR #1956) Windows/MinGW-W64 CI #344: Commit f4165e9 pushed by daviesrob
4m 39s develop
develop
4m 39s
Recognise the tabix comment character (-c) when reading records. Windows/MinGW-W64 CI #341: Commit 34b3e19 pushed by whitwham
4m 46s develop
develop
4m 46s
Update htscodecs for better AVX2 / AVX512 runtime detection Windows/MinGW-W64 CI #337: Commit 8371e21 pushed by jkbonfield
4m 34s develop
develop
4m 34s
Fix possible memory leak on successful match in kmemmem() Windows/MinGW-W64 CI #335: Commit c767e60 pushed by whitwham
4m 41s develop
develop
4m 41s
Add tests for CRAM TLEN generation. Windows/MinGW-W64 CI #334: Commit c08b363 pushed by whitwham
4m 34s develop
develop
4m 34s
Consolidate and simplify SAM header parsing Windows/MinGW-W64 CI #328: Commit 3668b93 pushed by whitwham
5m 1s develop
develop
5m 1s
For the VCF rlen calculation, only use SVLEN for DEL, DUP and CNV sym… Windows/MinGW-W64 CI #324: Commit ca3a57b pushed by pd3
4m 48s develop
develop
4m 48s
Simplify setting next[] in bam_next_basemod Windows/MinGW-W64 CI #323: Commit d677f34 pushed by daviesrob
5m 35s develop
develop
5m 35s
Fix segfault on an empty valid MM tag. (PR #1939) Windows/MinGW-W64 CI #311: Commit 199e45c pushed by daviesrob
4m 33s develop
develop
4m 33s
Merge version number bump and NEWS file from master Windows/MinGW-W64 CI #302: Commit 525cbbd pushed by daviesrob
4m 42s develop
develop
4m 42s
Update to htscodecs v1.6.4 Windows/MinGW-W64 CI #298: Commit a21c910 pushed by jkbonfield
4m 36s develop
develop
4m 36s
Ensure sam_hdr_dup() always allocates sam_hdr_t::text Windows/MinGW-W64 CI #296: Commit 7582a01 pushed by daviesrob
4m 33s develop
develop
4m 33s
Permit better fuzzing detection and fix block size growth. Windows/MinGW-W64 CI #294: Commit 6a399ca pushed by daviesrob
4m 36s develop
develop
4m 36s
Improved error handling in cram_compress_block2. (PR #1931) Windows/MinGW-W64 CI #293: Commit 09c89d8 pushed by daviesrob
4m 28s develop
develop
4m 28s
Fix typo in ref-cache configure check for libcurl (#1929) Windows/MinGW-W64 CI #287: Commit 4a11e1f pushed by vasudeva8
4m 44s develop
develop
4m 44s
Change optimisation for -fsanitize=address,undefined test build (#1924) Windows/MinGW-W64 CI #283: Commit 33ddaaf pushed by vasudeva8
8m 21s develop
develop
8m 21s
Work around old macOS SDKs hiding O_DIRECTORY Windows/MinGW-W64 CI #282: Commit 31006e1 pushed by whitwham
6m 8s develop
develop
6m 8s