Merge pull request #130 from pysat/maint/nose_dep

MAINT: testing standards

Author: jklenzing

CHANGELOG.md

@@ -12,6 +12,7 @@ This project adheres to [Semantic Versioning](https://semver.org/).
   * Added manual test for pysat and pysatNASA Release Candidates
   * Added manual test for pysatModels RC pip install
   * Updated tests to new pysat and pytest standards
+  * Added a cap for pysatNASA
 * Documentation
   * Added badges and instructions for PyPi and Zenodo
 

README.md

@@ -13,7 +13,7 @@
 pysatModels handles model-centric data loading through pysat and contains a
 variety of tools to perform model-data analysis, including model validation.
 
-Come join us on Slack! An invitation to the pysat workspace is available 
+Come join us on Slack! An invitation to the pysat workspace is available
 in the 'About' section of the
 [pysat GitHub Repository.](https://github.com/pysat/pysat)
 
@@ -27,13 +27,13 @@ examples on how to use the routines
 pysatModels uses common Python modules, as well as modules developed by and for
 the Space Physics community.  This module officially supports Python 3.6+.
 
-|   Common modules   | Community modules |
-| ------------------ | ----------------- |
-| numpy              | pyForecastTools   |
-| pandas >= 1.4.0    | pysat >= 3.0.4    |
-| requests           | pysatNASA         |
-| scipy              |                   |
-| xarray             |                   |
+|   Common modules   | Community modules  |
+| ------------------ | ------------------ |
+| numpy              | pyForecastTools    |
+| pandas >= 1.4.0    | pysat >= 3.0.4     |
+| requests           | pysatNASA <= 0.0.4 |
+| scipy              |                    |
+| xarray             |                    |
 
 ## Installation through PyPi
 

docs/installation.rst

@@ -24,8 +24,8 @@ the Space Physics community.  This module officially supports Python 3.6+.
  Common modules Community modules
  ============== =================
   numpy         pysat
-  pandas        pyForecastTools
-  requests
+  pandas        pysatNASA
+  requests      pyForecastTools
   scipy
   xarray
  ============== =================
@@ -85,7 +85,7 @@ is set up, you may choose to register the the :py:mod:`pysatModel` model
 
 .. code:: python
 
-	  
+
    import pysat
    import pysatModels as pymod
 

pysatModels/tests/test_methods_general.py

@@ -14,15 +14,15 @@
 class TestMethodsGeneralLogging(object):
     """Unit tests for log messages raised by general methods."""
 
-    def setup(self):
+    def setup_method(self):
         """Set up the unit test environment."""
         self.ch = logging.StreamHandler()
         self.ch.setLevel(logging.INFO)
         self.model = pysat.Instrument("pysat", "testmodel")
 
         return
 
-    def teardown(self):
+    def teardown_method(self):
         """Clean up the unit test environment."""
 
         del self.ch, self.model
@@ -50,7 +50,7 @@ def test_general_clean(self, caplog):
 class TestMethodsGeneralDownload(object):
     """Unit tests for general methods handling downloads."""
 
-    def setup(self):
+    def setup_method(self):
         """Set up the unit test environment."""
         # TODO(#100): remove if-statement when it is always triggered
         tkwargs = {}
@@ -65,7 +65,7 @@ def setup(self):
 
         return
 
-    def teardown(self):
+    def teardown_method(self):
         """Clean up the unit test environment."""
 
         if os.path.isfile(self.out_file):

pysatModels/tests/test_models.py

@@ -14,78 +14,27 @@
 import sys
 import tempfile
 
+# Import the test classes from pysat
 import pysat
-from pysat.tests.instrument_test_class import InstTestClass
+from pysat.tests.classes import cls_instrument_library as clslib
 
 import pysatModels
 
 # Retrieve the lists of Model instruments and testing methods
-instruments = pysat.utils.generate_instrument_list(inst_loc=pysatModels.models)
-method_list = [func for func in dir(InstTestClass)
-               if callable(getattr(InstTestClass, func))]
-
-# Search tests for iteration via pytestmark, update instrument list
-for method in method_list:
-    if hasattr(getattr(InstTestClass, method), 'pytestmark'):
-        # Get list of names of pytestmarks
-        mark_name = [mod_mark.name for mod_mark
-                     in getattr(InstTestClass, method).pytestmark]
-
-        # Add instruments from your library
-        if 'all_inst' in mark_name:
-            mark = pytest.mark.parametrize("inst_name", instruments['names'])
-            getattr(InstTestClass, method).pytestmark.append(mark)
-        elif 'download' in mark_name:
-            mark = pytest.mark.parametrize("inst_dict",
-                                           instruments['download'])
-            getattr(InstTestClass, method).pytestmark.append(mark)
-        elif 'no_download' in mark_name:
-            mark = pytest.mark.parametrize("inst_dict",
-                                           instruments['no_download'])
-            getattr(InstTestClass, method).pytestmark.append(mark)
-
-
-class TestModels(InstTestClass):
+instruments = clslib.InstLibTests.initialize_test_package(
+    clslib.InstLibTests, inst_loc=pysatModels.models)
+
+
+class TestModels(clslib.InstLibTests):
     """Main class for instrument tests.
 
     Note
     ----
-    Uses class level setup and teardown so that all tests use the same
-    temporary directory. We do not want to geneate a new tempdir for each test,
-    as the load tests need to be the same as the download tests.
+    All standard tests, setup, and teardown inherited from the core pysat
+    instrument test class.
 
     """
 
-    def setup_class(self):
-        """Initialize the testing setup once before all tests are run."""
-        # Make sure to use a temporary directory so that the user setup is not
-        # altered
-        # TODO(#100): remove if-statement when it is always triggered
-        tkwargs = {}
-        if sys.version_info.major >= 3 and sys.version_info.minor >= 10:
-            tkwargs = {"ignore_cleanup_errors": True}
-        self.tempdir = tempfile.TemporaryDirectory(**tkwargs)
-        self.saved_path = pysat.params['data_dirs']
-        pysat.params.data['data_dirs'] = [self.tempdir.name]
-
-        # Assign the location of the model Instrument sub-modules
-        self.inst_loc = pysatModels.models
-        return
-
-    def teardown_class(self):
-        """Clean up downloaded files and parameters from tests."""
-
-        pysat.params.data['data_dirs'] = self.saved_path
-
-        # TODO(#100): Remove try/except when Python 3.10 is the lowest version
-        try:
-            self.tempdir.cleanup()
-        except Exception:
-            pass
-
-        del self.inst_loc, self.saved_path, self.tempdir
-        return
-
 
 class TestSAMIPysatVersion(object):
     """Test SAMI load code for pysat version differences across v3.0.2."""

pysatModels/tests/test_utils_convert.py

@@ -64,7 +64,7 @@ def eval_xarray_output(inst, xdata):
 class TestUtilsConvertLoadModelXarray(object):
     """Unit tests for `utils.convert.load_model_xarray`."""
 
-    def setup(self):
+    def setup_method(self):
         """Create a clean testing setup before each method."""
         self.ftime = pysat.instruments.pysat_testing_xarray._test_dates['']['']
         self.filename = "%Y-%m-%d.nofile"
@@ -76,7 +76,7 @@ def setup(self):
         self.xout = None
         self.temp_file = 'None'
 
-    def teardown(self):
+    def teardown_method(self):
         """Clean up test environment after each method."""
         if os.path.isfile(self.temp_file):
             os.remove(self.temp_file)
@@ -130,11 +130,11 @@ def test_load_inst(self, mkey, mval):
 class TestUtilsConvertPysatXarray(object):
     """Unit tests for utils.convert.convert_pysat_to_xarray."""
 
-    def setup(self):
+    def setup_method(self):
         """Create a clean testing setup before each method."""
         self.ref_time = pysat.instruments.pysat_testing._test_dates['']['']
 
-    def teardown(self):
+    def teardown_method(self):
         """Clean up test environment after each method."""
         del self.ref_time
 

pysatModels/tests/test_utils_extract.py

@@ -20,7 +20,7 @@
 class TestUtilsExtractInstThroughMod(object):
     """Unit tests for `instrument_view_through_model`."""
 
-    def setup(self):
+    def setup_method(self):
         """Set up the unit test environment for each method."""
 
         self.inst = pysat.Instrument(platform='pysat', name='testing')
@@ -51,7 +51,7 @@ def setup(self):
         self.out = []
         return
 
-    def teardown(self):
+    def teardown_method(self):
         """Clean up the unit test environment after each method."""
 
         del self.inst, self.model, self.input_args, self.out, self.input_kwargs
@@ -205,7 +205,7 @@ def test_success_for_some_already_ran_data(self, caplog):
 class TestUtilsExtractModObs(TestUtilsExtractInstThroughMod):
     """Unit tests for `utils.extract.extract_modelled_observations`."""
 
-    def setup(self):
+    def setup_method(self):
         """Set up the unit test environment for each method."""
 
         self.inst = pysat.Instrument(platform='pysat', name='testing')
@@ -233,7 +233,7 @@ def setup(self):
         self.out = []
         return
 
-    def teardown(self):
+    def teardown_method(self):
         """Clean up the unit test environment after each method."""
 
         del self.inst, self.model, self.input_args, self.out, self.input_kwargs
@@ -351,7 +351,7 @@ def test_success_for_some_already_ran_data(self, caplog):
 class TestUtilsExtractModObsXarray(TestUtilsExtractModObs):
     """Xarray unit tests for `utils.extract.extract_modelled_observations`."""
 
-    def setup(self):
+    def setup_method(self):
         """Set up the unit test environment for each method."""
 
         self.inst = pysat.Instrument(platform='pysat', name='testing_xarray')
@@ -379,7 +379,7 @@ def setup(self):
         self.out = []
         return
 
-    def teardown(self):
+    def teardown_method(self):
         """Clean up the unit test environment after each method."""
 
         del self.inst, self.model, self.input_args, self.out, self.input_kwargs
@@ -393,7 +393,7 @@ def teardown(self):
 class TestUtilsExtractModObsXarray2D(TestUtilsExtractModObs):
     """Xarray unit tests for `utils.extract.extract_modelled_observations`."""
 
-    def setup(self):
+    def setup_method(self):
         """Set up the unit test environment for each method."""
 
         self.inst = pysat.Instrument(platform='pysat', name='testing2d_xarray')
@@ -421,7 +421,7 @@ def setup(self):
         self.out = []
         return
 
-    def teardown(self):
+    def teardown_method(self):
         """Clean up the unit test environment after each method."""
 
         del self.inst, self.model, self.input_args, self.out, self.input_kwargs
@@ -431,7 +431,7 @@ def teardown(self):
 class TestUtilsExtractInstModViewXarray(TestUtilsExtractInstThroughMod):
     """Xarray unit tests for `instrument_view_through_model`."""
 
-    def setup(self):
+    def setup_method(self):
         """Run before every method to create a clean testing setup."""
 
         self.inst = pysat.Instrument(platform='pysat', name='testing2d_xarray')
@@ -464,7 +464,7 @@ def setup(self):
 
         return
 
-    def teardown(self):
+    def teardown_method(self):
         """Run after every method to clean up previous testing."""
 
         del self.inst, self.model, self.input_args, self.out, self.input_kwargs
@@ -482,7 +482,7 @@ def teardown(self):
 class TestUtilsAltitudePressure(object):
     """Unit tests for `utils.extract.instrument_altitude_to_model_pressure`."""
 
-    def setup(self):
+    def setup_method(self):
         """Set up the unit test environment for each method."""
 
         self.inst = pysat.Instrument(platform='pysat', name='testing')
@@ -509,7 +509,7 @@ def setup(self):
         self.out = []
         return
 
-    def teardown(self):
+    def teardown_method(self):
         """Clean up the unit test environment after each method."""
 
         del self.inst, self.model, self.input_args, self.out
@@ -618,7 +618,7 @@ def test_alternate_output_names(self):
 class TestUtilsAltitudePressureXarray(TestUtilsAltitudePressure):
     """Xarray unit tests for `instrument_altitude_to_model_pressure`."""
 
-    def setup(self):
+    def setup_method(self):
         """Set up the unit test environment for each method."""
 
         self.inst = pysat.Instrument(platform='pysat', name='testing2d_xarray')
@@ -645,7 +645,7 @@ def setup(self):
         self.out = []
         return
 
-    def teardown(self):
+    def teardown_method(self):
         """Clean up the unit test environment after each method."""
 
         del self.inst, self.model, self.input_args, self.out
@@ -660,7 +660,7 @@ def teardown(self):
 class TestUtilsExtractInstModIrregView(object):
     """Unit tests for `utils.extract.instrument_view_irregular_model`."""
 
-    def setup(self):
+    def setup_method(self):
         """Run before every method to create a clean testing setup."""
 
         self.inst = pysat.Instrument(platform='pysat', name='testing',
@@ -689,7 +689,7 @@ def setup(self):
 
         return
 
-    def teardown(self):
+    def teardown_method(self):
         """Run after every method to clean up previous testing."""
 
         del self.inst, self.model, self.input_args, self.out, self.in_kwargs
@@ -773,7 +773,7 @@ def test_bad_kwarg_input(self, bad_key, bad_val, err_msg):
 class TestUtilsExtractInstModIrregViewXarray(TestUtilsExtractInstModIrregView):
     """Xarray unit tests for `instrument_view_irregular_model`."""
 
-    def setup(self):
+    def setup_method(self):
         """Run before every method to create a clean testing setup."""
 
         self.inst = pysat.Instrument(platform='pysat', name='testing2d_xarray',
@@ -802,7 +802,7 @@ def setup(self):
 
         return
 
-    def teardown(self):
+    def teardown_method(self):
         """Run after every method to clean up previous testing."""
 
         del self.inst, self.model, self.input_args, self.out, self.in_kwargs