test(dragmap): Add basic test

Author: edmundmiller

tests/test_aligner.yml

@@ -22,3 +22,27 @@
     - path: results/reports/qualimap/test/test.recal
     - path: results/reports/samtools_stats/test/test.md.cram.stats
     - path: results/reports/samtools_stats/test/test.recal.cram.stats
+- name: Run dragmap
+  command: nextflow run main.nf -profile test,docker --aligner dragmap
+  tags:
+    - aligner
+    - dragmap
+    - preprocessing
+  files:
+    - path: results/multiqc
+    - path: results/preprocessing/test/markduplicates/test.md.cram
+    - path: results/preprocessing/test/markduplicates/test.md.cram.crai
+    - path: results/preprocessing/test/recal_table/test.recal.table
+    - path: results/preprocessing/test/recalibrated/test.recal.cram
+    - path: results/preprocessing/test/recalibrated/test.recal.cram.crai
+    - path: results/preprocessing/csv/markduplicates.csv
+    - path: results/preprocessing/csv/markduplicates_test.csv
+    - path: results/preprocessing/csv/markduplicates_no_table.csv
+    - path: results/preprocessing/csv/markduplicates_no_table_test.csv
+    - path: results/preprocessing/csv/recalibrated.csv
+    - path: results/preprocessing/csv/recalibrated_test.csv
+    - path: results/reports/fastqc/test-test_L1
+    - path: results/reports/qualimap/test/test.mapped
+    - path: results/reports/qualimap/test/test.recal
+    - path: results/reports/samtools_stats/test/test.md.cram.stats
+    - path: results/reports/samtools_stats/test/test.recal.cram.stats