nf-core
diff --git a/‎conf/modules.config‎
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diff --git a/‎modules.json‎
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diff --git a/‎modules/local/samtools/index/main.nf‎
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diff --git a/‎modules/local/samtools/index/meta.yml‎
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diff --git a/‎modules/local/samtools/mergecram/main.nf‎
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diff --git a/‎modules/local/samtools/viewindex/meta.yml‎
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diff --git a/‎modules/local/samtoolsview.nf‎
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diff --git a/‎modules/local/samtools/viewindex/main.nf‎ ‎…-core/modules/samtools/bamtocram/main.nf‎modules/local/samtools/viewindex/main.nf renamed to modules/nf-core/modules/samtools/bamtocram/main.nf
Lines changed: 5 additions & 7 deletions b/‎modules/local/samtools/viewindex/main.nf‎ ‎…-core/modules/samtools/bamtocram/main.nf‎modules/local/samtools/viewindex/main.nf renamed to modules/nf-core/modules/samtools/bamtocram/main.nf
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diff --git a/‎modules/local/samtools/mergecram/meta.yml‎ ‎…core/modules/samtools/bamtocram/meta.yml‎modules/local/samtools/mergecram/meta.yml renamed to modules/nf-core/modules/samtools/bamtocram/meta.yml
Lines changed: 19 additions & 12 deletions b/‎modules/local/samtools/mergecram/meta.yml‎ ‎…core/modules/samtools/bamtocram/meta.yml‎modules/local/samtools/mergecram/meta.yml renamed to modules/nf-core/modules/samtools/bamtocram/meta.yml
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diff --git a/‎modules/local/samtools/fastq/main.nf‎ ‎…re/modules/samtools/collatefastq/main.nf‎modules/local/samtools/fastq/main.nf renamed to modules/nf-core/modules/samtools/collatefastq/main.nf
Lines changed: 11 additions & 7 deletions b/‎modules/local/samtools/fastq/main.nf‎ ‎…re/modules/samtools/collatefastq/main.nf‎modules/local/samtools/fastq/main.nf renamed to modules/nf-core/modules/samtools/collatefastq/main.nf
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@@ -174,6 +174,12 @@
             "samtools/bam2fq": {
                 "git_sha": "897c33d5da084b61109500ee44c01da2d3e4e773"
             },
+            "samtools/bamtocram": {
+                "git_sha": "569e07f0af74e2a6ea43fca61ae90bb762893461"
+            },
+            "samtools/collatefastq": {
+                "git_sha": "705f8c9ac4dfdf07666e71abde28f267e2dfd5eb"
+            },
             "samtools/faidx": {
                 "git_sha": "897c33d5da084b61109500ee44c01da2d3e4e773"
             },
@@ -204,6 +210,9 @@
             "strelka/somatic": {
                 "git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d"
             },
+            "tabix/bgzip": {
+                "git_sha": "37bf3936f3665483d070a5e0e0b314311032af7c"
+            },
             "tabix/bgziptabix": {
                 "git_sha": "49b18b1639f4f7104187058866a8fab33332bdfe"
             },