|
5 | 5 | - preprocessing |
6 | 6 | files: |
7 | 7 | - path: results/csv/markduplicates.csv |
8 | | - md5sum: 0d6120bb99e92f6810343270711ca53e |
| 8 | + md5sum: 0dec46c4dc83acc263efc234805e9349 |
9 | 9 | - path: results/csv/markduplicates_no_table.csv |
10 | | - md5sum: 2a2d3d4842befd4def39156463859ee3 |
| 10 | + md5sum: f274df0cba98b2641fdc2a9becb23f78 |
11 | 11 | - path: results/csv/recalibrated.csv |
12 | | - md5sum: 2d29d9e53894dcce96a1b5beb6ef3312 |
| 12 | + md5sum: f6ab55df6c87f44c2d8651a2be0b959f |
13 | 13 | - path: results/multiqc |
14 | | - - path: results/preprocessing/markduplicates/test/test.md.cram |
| 14 | + - path: results/preprocessing/markduplicates/test2/test2.md.cram |
15 | 15 | # binary file changes md5sums on reruns |
16 | | - - path: results/preprocessing/markduplicates/test/test.md.cram.crai |
| 16 | + - path: results/preprocessing/markduplicates/test2/test2.md.cram.crai |
17 | 17 | # binary file changes md5sums on reruns |
18 | | - - path: results/preprocessing/recal_table/test/test.recal.table |
| 18 | + - path: results/preprocessing/recal_table/test2/test2.recal.table |
19 | 19 | # binary changes md5sums on reruns |
20 | | - - path: results/preprocessing/recalibrated/test/test.recal.cram |
| 20 | + - path: results/preprocessing/recalibrated/test2/test2.recal.cram |
21 | 21 | # binary file changes md5sums on reruns |
22 | | - - path: results/preprocessing/recalibrated/test/test.recal.cram.crai |
| 22 | + - path: results/preprocessing/recalibrated/test2/test2.recal.cram.crai |
23 | 23 | # binary file changes md5sums on reruns |
24 | | - - path: results/reports/fastqc/test-test_L1 |
25 | | - - path: results/reports/markduplicates/test/test.md.cram.metrics |
| 24 | + - path: results/reports/fastqc/test2-test_L1 |
| 25 | + - path: results/reports/markduplicates/test2/test2.md.cram.metrics |
26 | 26 | # text-based file changes md5sums on reruns |
27 | | - - path: results/reports/mosdepth/test/test.md.mosdepth.global.dist.txt |
28 | | - md5sum: 9269e959d5eec5273307693c6274f53e |
29 | | - - path: results/reports/mosdepth/test/test.md.mosdepth.region.dist.txt |
30 | | - md5sum: deb2df4f3ca19f441f0a22f04dea8723 |
31 | | - - path: results/reports/mosdepth/test/test.md.mosdepth.summary.txt |
32 | | - md5sum: 96acf3439477a1448b7e1b43c020c7d0 |
33 | | - - path: results/reports/mosdepth/test/test.md.regions.bed.gz |
34 | | - md5sum: c259a9fd73f576626c3a29841c2dc019 |
35 | | - - path: results/reports/mosdepth/test/test.md.regions.bed.gz.csi |
36 | | - md5sum: cf85ba4692f016af70db2a594d9effdf |
37 | | - - path: results/reports/mosdepth/test/test.recal.mosdepth.global.dist.txt |
38 | | - md5sum: 9269e959d5eec5273307693c6274f53e |
39 | | - - path: results/reports/mosdepth/test/test.recal.mosdepth.region.dist.txt |
40 | | - md5sum: deb2df4f3ca19f441f0a22f04dea8723 |
41 | | - - path: results/reports/mosdepth/test/test.recal.mosdepth.summary.txt |
42 | | - md5sum: 96acf3439477a1448b7e1b43c020c7d0 |
43 | | - - path: results/reports/mosdepth/test/test.recal.regions.bed.gz |
44 | | - md5sum: c259a9fd73f576626c3a29841c2dc019 |
45 | | - - path: results/reports/samtools/test/test.md.cram.stats |
| 27 | + - path: results/reports/mosdepth/test2/test2.md.mosdepth.global.dist.txt |
| 28 | + md5sum: 85d38a74ce189b9110c57cd94bc26757 |
| 29 | + - path: results/reports/mosdepth/test2/test2.md.mosdepth.region.dist.txt |
| 30 | + md5sum: 286d57b7d9b3a95ef18ab2eb7f913d81 |
| 31 | + - path: results/reports/mosdepth/test2/test2.md.mosdepth.summary.txt |
| 32 | + md5sum: 04b69ef7f00199dcea7822a79d2c7bd7 |
| 33 | + - path: results/reports/mosdepth/test2/test2.md.regions.bed.gz |
| 34 | + md5sum: 4e6c360aea7f05d801b2ea5685fe154a |
| 35 | + - path: results/reports/mosdepth/test2/test2.md.regions.bed.gz.csi |
| 36 | + md5sum: 5bf5fc178e4faf2462427502c3666004 |
| 37 | + - path: results/reports/mosdepth/test2/test2.recal.mosdepth.global.dist.txt |
| 38 | + md5sum: 85d38a74ce189b9110c57cd94bc26757 |
| 39 | + - path: results/reports/mosdepth/test2/test2.recal.mosdepth.region.dist.txt |
| 40 | + md5sum: 286d57b7d9b3a95ef18ab2eb7f913d81 |
| 41 | + - path: results/reports/mosdepth/test2/test2.recal.mosdepth.summary.txt |
| 42 | + md5sum: 04b69ef7f00199dcea7822a79d2c7bd7 |
| 43 | + - path: results/reports/mosdepth/test2/test2.recal.regions.bed.gz |
| 44 | + md5sum: 4e6c360aea7f05d801b2ea5685fe154a |
| 45 | + - path: results/reports/samtools/test2/test2.md.cram.stats |
46 | 46 | # conda changes md5sums for test |
47 | | - - path: results/reports/samtools/test/test.recal.cram.stats |
| 47 | + - path: results/reports/samtools/test2/test2.recal.cram.stats |
48 | 48 | # conda changes md5sums for test |
49 | 49 | - path: results/preprocessing/mapped/ |
50 | 50 | should_exist: false |
|
56 | 56 | - skip_qc |
57 | 57 | files: |
58 | 58 | - path: results/csv/markduplicates.csv |
59 | | - md5sum: 0d6120bb99e92f6810343270711ca53e |
| 59 | + md5sum: 0dec46c4dc83acc263efc234805e9349 |
60 | 60 | - path: results/csv/markduplicates_no_table.csv |
61 | | - md5sum: 2a2d3d4842befd4def39156463859ee3 |
| 61 | + md5sum: f274df0cba98b2641fdc2a9becb23f78 |
62 | 62 | - path: results/csv/recalibrated.csv |
63 | | - md5sum: 2d29d9e53894dcce96a1b5beb6ef3312 |
64 | | - - path: results/preprocessing/markduplicates/test/test.md.cram |
| 63 | + md5sum: f6ab55df6c87f44c2d8651a2be0b959f |
| 64 | + - path: results/preprocessing/markduplicates/test2/test2.md.cram |
65 | 65 | # binary file changes md5sums on reruns |
66 | | - - path: results/preprocessing/markduplicates/test/test.md.cram.crai |
| 66 | + - path: results/preprocessing/markduplicates/test2/test2.md.cram.crai |
67 | 67 | # binary file changes md5sums on reruns |
68 | | - - path: results/preprocessing/recal_table/test/test.recal.table |
| 68 | + - path: results/preprocessing/recal_table/test2/test2.recal.table |
69 | 69 | # binary changes md5sums on reruns |
70 | | - - path: results/preprocessing/recalibrated/test/test.recal.cram |
| 70 | + - path: results/preprocessing/recalibrated/test2/test2.recal.cram |
71 | 71 | # binary file changes md5sums on reruns |
72 | | - - path: results/preprocessing/recalibrated/test/test.recal.cram.crai |
| 72 | + - path: results/preprocessing/recalibrated/test2/test2.recal.cram.crai |
73 | 73 | # binary file changes md5sums on reruns |
74 | 74 | - path: results/multiqc |
75 | 75 | should_exist: false |
|
89 | 89 | - save_output_as_bam |
90 | 90 | files: |
91 | 91 | - path: results/csv/markduplicates.csv |
92 | | - md5sum: 6004ab16b63012e336f6251396a983c5 |
| 92 | + md5sum: 974a2375ca62c56078076e40768b6367 |
93 | 93 | - path: results/csv/markduplicates_no_table.csv |
94 | | - md5sum: 8a145eca178cfd02403d60122b9d3960 |
| 94 | + md5sum: d508740377e048822c9e2f11f048a56d |
95 | 95 | - path: results/csv/recalibrated.csv |
96 | | - md5sum: 2dfbcaaeaaf4937c51c5c310f1c77614 |
| 96 | + md5sum: e5f9c71eb6746324a68a0ef989c50a28 |
97 | 97 | - path: results/multiqc |
98 | | - - path: results/preprocessing/markduplicates/test/test.md.bam |
| 98 | + - path: results/preprocessing/markduplicates/test2/test2.md.bam |
99 | 99 | # conda changes md5sums for test |
100 | | - - path: results/preprocessing/markduplicates/test/test.md.bam.bai |
| 100 | + - path: results/preprocessing/markduplicates/test2/test2.md.bam.bai |
101 | 101 | # conda changes md5sums for test |
102 | | - - path: results/preprocessing/recal_table/test/test.recal.table |
| 102 | + - path: results/preprocessing/recal_table/test2/test2.recal.table |
103 | 103 | # binary changes md5sums on reruns |
104 | | - - path: results/preprocessing/recalibrated/test/test.recal.bam |
| 104 | + - path: results/preprocessing/recalibrated/test2/test2.recal.bam |
105 | 105 | # binary changes md5sums on reruns |
106 | | - - path: results/preprocessing/recalibrated/test/test.recal.bam.bai |
| 106 | + - path: results/preprocessing/recalibrated/test2/test2.recal.bam.bai |
107 | 107 | # binary changes md5sums on reruns |
108 | | - - path: results/reports/fastqc/test-test_L1 |
109 | | - - path: results/reports/markduplicates/test/test.md.cram.metrics |
| 108 | + - path: results/reports/fastqc/test2-test_L1 |
| 109 | + - path: results/reports/markduplicates/test2/test2.md.cram.metrics |
110 | 110 | # text-based file changes md5sums on reruns |
111 | | - - path: results/reports/mosdepth/test/test.md.mosdepth.global.dist.txt |
112 | | - md5sum: 9269e959d5eec5273307693c6274f53e |
113 | | - - path: results/reports/mosdepth/test/test.md.mosdepth.region.dist.txt |
114 | | - md5sum: deb2df4f3ca19f441f0a22f04dea8723 |
115 | | - - path: results/reports/mosdepth/test/test.md.mosdepth.summary.txt |
116 | | - md5sum: 96acf3439477a1448b7e1b43c020c7d0 |
117 | | - - path: results/reports/mosdepth/test/test.md.regions.bed.gz |
118 | | - md5sum: c259a9fd73f576626c3a29841c2dc019 |
119 | | - - path: results/reports/mosdepth/test/test.md.regions.bed.gz.csi |
120 | | - md5sum: cf85ba4692f016af70db2a594d9effdf |
121 | | - - path: results/reports/mosdepth/test/test.recal.mosdepth.global.dist.txt |
122 | | - md5sum: 9269e959d5eec5273307693c6274f53e |
123 | | - - path: results/reports/mosdepth/test/test.recal.mosdepth.region.dist.txt |
124 | | - md5sum: deb2df4f3ca19f441f0a22f04dea8723 |
125 | | - - path: results/reports/mosdepth/test/test.recal.mosdepth.summary.txt |
126 | | - md5sum: 96acf3439477a1448b7e1b43c020c7d0 |
127 | | - - path: results/reports/mosdepth/test/test.recal.regions.bed.gz |
128 | | - md5sum: c259a9fd73f576626c3a29841c2dc019 |
129 | | - - path: results/reports/mosdepth/test/test.recal.regions.bed.gz.csi |
130 | | - md5sum: cf85ba4692f016af70db2a594d9effdf |
131 | | - - path: results/reports/samtools/test/test.md.cram.stats |
| 111 | + - path: results/reports/mosdepth/test2/test2.md.mosdepth.global.dist.txt |
| 112 | + md5sum: 85d38a74ce189b9110c57cd94bc26757 |
| 113 | + - path: results/reports/mosdepth/test2/test2.md.mosdepth.region.dist.txt |
| 114 | + md5sum: 286d57b7d9b3a95ef18ab2eb7f913d81 |
| 115 | + - path: results/reports/mosdepth/test2/test2.md.mosdepth.summary.txt |
| 116 | + md5sum: 04b69ef7f00199dcea7822a79d2c7bd7 |
| 117 | + - path: results/reports/mosdepth/test2/test2.md.regions.bed.gz |
| 118 | + md5sum: 4e6c360aea7f05d801b2ea5685fe154a |
| 119 | + - path: results/reports/mosdepth/test2/test2.md.regions.bed.gz.csi |
| 120 | + md5sum: 5bf5fc178e4faf2462427502c3666004 |
| 121 | + - path: results/reports/mosdepth/test2/test2.recal.mosdepth.global.dist.txt |
| 122 | + md5sum: 85d38a74ce189b9110c57cd94bc26757 |
| 123 | + - path: results/reports/mosdepth/test2/test2.recal.mosdepth.region.dist.txt |
| 124 | + md5sum: 286d57b7d9b3a95ef18ab2eb7f913d81 |
| 125 | + - path: results/reports/mosdepth/test2/test2.recal.mosdepth.summary.txt |
| 126 | + md5sum: 04b69ef7f00199dcea7822a79d2c7bd7 |
| 127 | + - path: results/reports/mosdepth/test2/test2.recal.regions.bed.gz |
| 128 | + md5sum: 4e6c360aea7f05d801b2ea5685fe154a |
| 129 | + - path: results/reports/mosdepth/test2/test2.recal.regions.bed.gz.csi |
| 130 | + md5sum: 5bf5fc178e4faf2462427502c3666004 |
| 131 | + - path: results/reports/samtools/test2/test2.md.cram.stats |
132 | 132 | # conda changes md5sums for test |
133 | | - - path: results/reports/samtools/test/test.recal.cram.stats |
| 133 | + - path: results/reports/samtools/test2/test2.recal.cram.stats |
134 | 134 | # conda changes md5sums for test |
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