outdated path

nevrome · nevrome · commit ab438bb48b79 · 2021-12-19T14:03:23.000+01:00
diff --git a/code/manage.R b/code/manage.R
@@ -13,7 +13,7 @@ down <- function(...) { eva.cluster::cluster_down(
 
 #### build and upload singularity container ####
 
-system("./singularity_build_sif.sh")
+# bash: ./singularity_build_sif.sh
 up("singularity_mobest.sif")
 
 #### download output of the shake pipeline ####
diff --git a/singularity_build_sif.sh b/singularity_build_sif.sh
@@ -1,3 +1,3 @@
 #!/bin/bash
 
-sudo SINGULARITY_TMPDIR=$HOME/agora/mobest.analysis.2020/stempdir singularity build singularity_mobest.sif singularity_mobest.def
+sudo SINGULARITY_TMPDIR=$HOME/agora/mobest.analysis.2022/stempdir singularity build singularity_mobest.sif singularity_mobest.def

Original file line number	Diff line number	Diff line change
`@@ -1,3 +1,3 @@`
`1`	`1`	`#!/bin/bash`
`2`	`2`
`3`		`-sudo SINGULARITY_TMPDIR=$HOME/agora/mobest.analysis.2020/stempdir singularity build singularity_mobest.sif singularity_mobest.def`
	`3`	`+sudo SINGULARITY_TMPDIR=$HOME/agora/mobest.analysis.2022/stempdir singularity build singularity_mobest.sif singularity_mobest.def`