Apply new ontology files

Author: Ben-Ensembl

ensembl-glossary.obo

@@ -1,5 +1,5 @@
 format-version: 1.2
-data-version: http://ensembl.org/glossary/releases/2022-08-31
+data-version: http://ensembl.org/glossary/releases/2023-01-04
 remark: ensembl-glossary
 ontology: ensembl-glossary
 
@@ -3112,6 +3112,13 @@ def: "Alternatively spliced transcript of a protein coding gene for which we can
 is_a: ENSGLOSSARY:0000025 ! Biotype
 property_value: http://ensembl.org/glossary/property/documentation http://www.ensembl.org/info/genome/genebuild/biotypes.html xsd:string
 
+[Term]
+id: ENSGLOSSARY:0000378
+name: Protein coding LOF
+def: "Not translated in the reference genome owing to a SNP/DIP but in other individuals/haplotypes/strains the transcript is translated. Replaces the polymorphic_pseudogene transcript biotype." []
+is_a: ENSGLOSSARY:0000025 ! Biotype
+property_value: http://ensembl.org/glossary/property/documentation http://www.ensembl.org/info/genome/genebuild/biotypes.html xsd:string
+
 [Typedef]
 id: http://ensembl.org/glossary/property/related
 name: related

ensembl-glossary.owl

@@ -10,7 +10,7 @@
      xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
      xmlns:obo="http://purl.obolibrary.org/obo/">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/ensembl-glossary.owl">
-        <owl:versionIRI rdf:resource="http://ensembl.org/glossary/ensembl-glossary/releases/2022-08-31/ensembl-glossary.owl"/>
+        <owl:versionIRI rdf:resource="http://ensembl.org/glossary/ensembl-glossary/releases/2023-01-04/ensembl-glossary.owl"/>
         <rdfs:comment>ensembl-glossary</rdfs:comment>
     </owl:Ontology>
 
@@ -4730,6 +4730,17 @@
         <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.</obo:IAO_0000115>
         <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Protein coding CDS not defined</rdfs:label>
     </owl:Class>
+    
+
+
+    <!-- http://ensembl.org/glossary/ENSGLOSSARY_0000378 -->
+
+    <owl:Class rdf:about="http://ensembl.org/glossary/ENSGLOSSARY_0000378">
+        <rdfs:subClassOf rdf:resource="http://ensembl.org/glossary/ENSGLOSSARY_0000025"/>
+        <property:documentation rdf:datatype="http://www.w3.org/2001/XMLSchema#string">http://www.ensembl.org/info/genome/genebuild/biotypes.html</property:documentation>
+        <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Not translated in the reference genome owing to a SNP/DIP but in other individuals/haplotypes/strains the transcript is translated. Replaces the polymorphic_pseudogene transcript biotype.</obo:IAO_0000115>
+        <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Protein coding LOF</rdfs:label>
+    </owl:Class>
 </rdf:RDF>