linked_vcf_list.h

// Copyright 2023 karpulevich
//
// Licensed under the Apache License, Version 2.0 (the "License");
// you may not use this file except in compliance with the License.
// You may obtain a copy of the License at
//
//     http://www.apache.org/licenses/LICENSE-2.0
//
// Unless required by applicable law or agreed to in writing, software
// distributed under the License is distributed on an "AS IS" BASIS,
// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
// See the License for the specific language governing permissions and
// limitations under the License.

#include <stdbool.h>

struct node {
    unsigned long pos;
    bcf1_t *rec;
    int CHR_ID;
    char * REF;
    char * ALT;
    struct node *next;
};

bool isListEmpty();
void handleGTList(mm_idx_t * mi, bcf_hdr_t *hdr, mm128_v *p);
void insertatbegin(unsigned long pos, bcf1_t *rec, int CHR_ID, char * REF, char * ALT);
void deleteList();