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| 1 | +/* |
| 2 | + * Licensed to the Apache Software Foundation (ASF) under one or more |
| 3 | + * contributor license agreements. See the NOTICE file distributed with |
| 4 | + * this work for additional information regarding copyright ownership. |
| 5 | + * The ASF licenses this file to You under the Apache License, Version 2.0 |
| 6 | + * (the "License"); you may not use this file except in compliance with |
| 7 | + * the License. You may obtain a copy of the License at |
| 8 | + * |
| 9 | + * http://www.apache.org/licenses/LICENSE-2.0 |
| 10 | + * |
| 11 | + * Unless required by applicable law or agreed to in writing, software |
| 12 | + * distributed under the License is distributed on an "AS IS" BASIS, |
| 13 | + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. |
| 14 | + * See the License for the specific language governing permissions and |
| 15 | + * limitations under the License. |
| 16 | + */ |
| 17 | + |
| 18 | +package org.apache.spark.mllib.stat.impl |
| 19 | + |
| 20 | +import breeze.linalg.{DenseVector => BreezeVector, DenseMatrix => BreezeMatrix} |
| 21 | +import breeze.linalg.{Transpose, det, inv} |
| 22 | + |
| 23 | +/** |
| 24 | + * Utility class to implement the density function for multivariate Gaussian distribution. |
| 25 | + * Breeze provides this functionality, but it requires the Apache Commons Math library, |
| 26 | + * so this class is here so-as to not introduce a new dependency in Spark. |
| 27 | + */ |
| 28 | +private[mllib] class MultivariateGaussian( |
| 29 | + val mu: BreezeVector[Double], |
| 30 | + val sigma: BreezeMatrix[Double]) extends Serializable { |
| 31 | + private val sigmaInv2 = inv(sigma) * -0.5 |
| 32 | + private val U = math.pow(2.0 * math.Pi, -mu.length / 2.0) * math.pow(det(sigma), -0.5) |
| 33 | + |
| 34 | + def pdf(x: BreezeVector[Double]): Double = { |
| 35 | + val delta = x - mu |
| 36 | + val deltaTranspose = new Transpose(delta) |
| 37 | + U * math.exp(deltaTranspose * sigmaInv2 * delta) |
| 38 | + } |
| 39 | +} |
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