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ruff updates #1396

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Run time

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Job	Run time
target (viral_refbased)	9m 27s
target (ci_unit_tests)	16m 33s
focal_self_test	1m 19s
target (ci_housekeeping)	3m 10s
target (integration_tests)	5m 56s
target (viral_assemble)	10m 24s
	46m 49s