quantms/modules/local/assemble_empirical_library/meta.yml at b2477e3fa7fcb3d39eda7254f5e10727afe4f025 · bigbio/quantms · GitHub

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name: assemble_empirical_library
description: A module for assemble empirical library analysis based on DIA-NN.
keywords:
  - DIA-NN
  - DIA
tools:
  - DIA-NN:
      description: |
        DIA-NN - a universal software for data-independent acquisition (DIA) proteomics data processing by Demichev.
      homepage: https://github.com/vdemichev/DiaNN
      documentation: https://github.com/vdemichev/DiaNN
input:
  - mzMLs:
      type: file
      description: Spectra file in mzML format
      pattern: "*.mzML"
  - quant:
      type: file
      description: The .quant files containing IDs and quantification information
  - lib:
      type: file
      description: Spectra library file
      pattern: "*.tsv"
  - diann_config:
      type: dir
      description: Specifies a file to load options/commands from.
      pattern: "*.cfg"
output:
  - empirical_library:
      type: file
      description: An empirical spectral library from the .quant files.
      pattern: "empirical_library.tsv"
  - log:
      type: file
      description: DIA-NN log file
      pattern: "assemble_empirical_library.log"
  - version:
      type: file
      description: File containing software version
      pattern: "versions.yml"
authors:
  - "@daichengxin"