update to TileDB-2.16.2

Author: DimitrisStaratzis

README.md

@@ -60,4 +60,5 @@ The below table references which versions of TileDB-Java are compatible with whi
 | 0.15.X              | 2.13.X         |
 | 0.16.X              | 2.14.X         |
 | 0.17.X              | 2.15.X         |
+| 0.18.X              | 2.16.X         |
 

cmake/Modules/FindTileDB_EP.cmake

@@ -48,14 +48,14 @@ if (NOT TILEDB_FOUND)
     # Try to download prebuilt artifacts unless the user specifies to build from source
     if(DOWNLOAD_TILEDB_PREBUILT)
         if (WIN32) # Windows
-          SET(DOWNLOAD_URL "https://github.com/TileDB-Inc/TileDB/releases/download/2.16.0-rc0/tiledb-windows-x86_64-2.16.0-rc0-d4a37a6.zip")
-          SET(DOWNLOAD_SHA1 "5237ce7dcfa07d629e00a32c41f366e4a52a11f2")
+          SET(DOWNLOAD_URL "https://github.com/TileDB-Inc/TileDB/releases/download/2.16.2/tiledb-windows-x86_64-2.16.2-07b65de.zip")
+          SET(DOWNLOAD_SHA1 "1cda23235ceeff70cb2b30e0c0e22fcd9fd83b51")
         elseif(APPLE) # macOS
-          SET(DOWNLOAD_URL "https://github.com/TileDB-Inc/TileDB/releases/download/2.16.0-rc0/tiledb-macos-x86_64-2.16.0-rc0-d4a37a6.tar.gz")
-          SET(DOWNLOAD_SHA1 "619741d8a8936e0fb6bc19ace9c111c29dfe226a")
+          SET(DOWNLOAD_URL "https://github.com/TileDB-Inc/TileDB/releases/download/2.16.2/tiledb-macos-x86_64-2.16.2-07b65de.tar.gz")
+          SET(DOWNLOAD_SHA1 "355233cee1515857c91b2f12fe4f7bbc1ac02465")
         else() # Linux
-          SET(DOWNLOAD_URL "https://github.com/TileDB-Inc/TileDB/releases/download/2.16.0-rc0/tiledb-linux-x86_64-2.16.0-rc0-d4a37a6.tar.gz")
-          SET(DOWNLOAD_SHA1 "c8ddba2c0f7bfecbb8df62d67ba1b7d98b79d000")
+          SET(DOWNLOAD_URL "https://github.com/TileDB-Inc/TileDB/releases/download/2.16.2/tiledb-linux-x86_64-2.16.2-07b65de.tar.gz")
+          SET(DOWNLOAD_SHA1 "b9fc44a104f31a9348a399e55ef9e32903b99590")
         endif()
 
         ExternalProject_Add(ep_tiledb

gradle.properties

@@ -1,10 +1,10 @@
 TILEDB_GIT_REPOSITORY=https://github.com/TileDB-Inc/TileDB
-TILEDB_GIT_TAG=2.16.0-rc0
+TILEDB_GIT_TAG=2.16.2
 TILEDB_VERBOSE=ON
 TILEDB_S3=ON
 TILEDB_AZURE=OFF
 TILEDB_HDFS=OFF
 TILEDB_SERIALIZATION=OFF
-FORCE_BUILD_TILEDB=ON
+FORCE_BUILD_TILEDB=OFF
 DOWNLOAD_TILEDB_PREBUILT=ON
 TILEDB_SKIP_S3AWSSDK_DIR_LENGTH_CHECK=ON

src/main/c/generated/tiledb_wrap.cxx

@@ -6770,30 +6770,6 @@ SWIGEXPORT jlong JNICALL Java_io_tiledb_libtiledb_tiledbJNI_tiledb_1filter_1list
 }
 
 
-SWIGEXPORT jint JNICALL Java_io_tiledb_libtiledb_tiledbJNI_sys_1nerr_1get(JNIEnv *jenv, jclass jcls) {
-  jint jresult = 0 ;
-  int result;
-  
-  (void)jenv;
-  (void)jcls;
-  result = (int)(int)sys_nerr;
-  jresult = (jint)result; 
-  return jresult;
-}
-
-
-SWIGEXPORT jlong JNICALL Java_io_tiledb_libtiledb_tiledbJNI_sys_1errlist_1get(JNIEnv *jenv, jclass jcls) {
-  jlong jresult = 0 ;
-  char **result = 0 ;
-  
-  (void)jenv;
-  (void)jcls;
-  result = (char **)(char **)sys_errlist;
-  *(char ***)&jresult = result; 
-  return jresult;
-}
-
-
 SWIGEXPORT jint JNICALL Java_io_tiledb_libtiledb_tiledbJNI_tiledb_1dimension_1alloc(JNIEnv *jenv, jclass jcls, jlong jarg1, jstring jarg2, jint jarg3, jlong jarg4, jlong jarg5, jlong jarg6) {
   jint jresult = 0 ;
   tiledb_ctx_t *arg1 = (tiledb_ctx_t *) 0 ;

src/main/java/io/tiledb/java/api/FragmentInfo.java

@@ -48,7 +48,7 @@ public FragmentInfo(Context ctx, String uri, Config config) throws TileDBError {
    * @param config the TileDB config
    * @throws TileDBError
    */
-  private void setConfig(Config config) throws TileDBError {
+  public void setConfig(Config config) throws TileDBError {
     try {
       ctx.handleError(
           tiledb.tiledb_fragment_info_set_config(
@@ -686,12 +686,12 @@ public String getFragmentName(long fragmentID) throws TileDBError {
    * @return The fragment name.
    * @throws TileDBError
    */
-  public String getFragmentNameV2(long fragmentID) throws TileDBError {
+  public TileDBString getFragmentNameV2(long fragmentID) throws TileDBError {
     SWIGTYPE_p_p_tiledb_string_handle_t name = tiledb.new_tiledb_string_handle_tpp();
 
     ctx.handleError(
         tiledb.tiledb_fragment_info_get_fragment_name_v2(
             ctx.getCtxp(), fragmentInfop, fragmentID, name));
-    return new TileDBString(ctx, name).getView().getFirst();
+    return new TileDBString(ctx, name);
   }
 }

src/main/java/io/tiledb/libtiledb/tiledb.java

@@ -1972,15 +1972,6 @@ public static capi_return_t tiledb_filter_list_get_max_chunk_size(
         true);
   }
 
-  public static int getSys_nerr() {
-    return tiledbJNI.sys_nerr_get();
-  }
-
-  public static SWIGTYPE_p_p_char getSys_errlist() {
-    long cPtr = tiledbJNI.sys_errlist_get();
-    return (cPtr == 0) ? null : new SWIGTYPE_p_p_char(cPtr, false);
-  }
-
   public static int tiledb_dimension_alloc(
       SWIGTYPE_p_tiledb_ctx_t ctx,
       String name,

src/main/java/io/tiledb/libtiledb/tiledbJNI.java

@@ -887,10 +887,6 @@ public static final native long tiledb_filter_list_get_filter_from_index(
   public static final native long tiledb_filter_list_get_max_chunk_size(
       long jarg1, long jarg2, long jarg3);
 
-  public static final native int sys_nerr_get();
-
-  public static final native long sys_errlist_get();
-
   public static final native int tiledb_dimension_alloc(
       long jarg1, String jarg2, int jarg3, long jarg4, long jarg5, long jarg6);
 

src/test/java/io/tiledb/java/api/VersionTest.java

@@ -35,6 +35,6 @@ public void testVersion() {
     System.out.println(version);
     Assert.assertTrue(version.getMajor() == 2);
     Assert.assertTrue(version.getMinor() == 16);
-    Assert.assertTrue(version.getRevision() == 0);
+    Assert.assertTrue(version.getRevision() == 2);
   }
 }